Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0434 ATGGCGGCATCTTCACCTTCTGCATCTCTCACTTCTTCTTCACTCTCCTCTCTCTCCCTCCACACTACTCACTCCTCTCCCCGCTTCTCTCTCCTCCCCATCACCCCCAAATTCACCTTCTCCTTCCCCACCCCACAACCACTCTTCCTCTCTTGCGCTTCCTCCTCCTCCTCTTCTTCTTCTTCCCGCATTGCCTCTCTCGCCACCATCACCAAAGCCAAACCTTCCAACGATGACATCGACACTTCCTTCTTCGACAACGTCAACCCCGAGCAAGACATTCCCTTCAGCCCCCCTGAACCCCCAGAAGGCTTCGTCCCCCCACCTTCCTTCGACGACGGCCCGTTGGAAACCGAAGACGAAATAGCCGCAGCGTACGAGGAGCTCTACGGTCCGGCATACAGCGGGGTCAGCGTTCTCGGGAACGACATATACGTGATGGACTCGAAGGTGAAGAAGGAGACCGGGTTTGGGTCGAAGGGGAAGAGGGAGAAGGTGAGGGATGGGTTCGAAGAGAGGGTGGTTCAGGTGAGGAGGGTTACCAAGGTTGTCAAAGGAGGGAAGCAGTTGAGGTTCAGGGCTGTTGTCGTTGTTGGTGACAAGAAGGGTCAGGTTGGTGTTGGTGTTGGCAAGGCCAAAGAGGTCATTGCTGCTGTTCAGAAATCTGCTGTGAATGCTAGGAGGAACATCATCACTGTCCCTATGACTAAATACTTGACTTTCCCACACAGAGCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCTCCGGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTGGAGATGGCAGGAGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCGCTCAACAATGCCAGAGCTACGGTTGTTGCAGTCCAGAAAATGAGGCAGTTTCGTGAGGTTGCTGAGCAGCGTGGAATCCCAATGGAAGAACTATGGAAATAG 981 0.5301 MAASSPSASLTSSSLSSLSLHTTHSSPRFSLLPITPKFTFSFPTPQPLFLSCASSSSSSSSSRIASLATITKAKPSNDDIDTSFFDNVNPEQDIPFSPPEPPEGFVPPPSFDDGPLETEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKVKKETGFGSKGKREKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIITVPMTKYLTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFREVAEQRGIPMEELWK* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0434 326 SUPERFAMILY dsRNA-binding domain-like 166 235 - -
Dod03g0434 326 MobiDBLite consensus disorder prediction 1 30 - -
Dod03g0434 326 MobiDBLite consensus disorder prediction 78 105 - -
Dod03g0434 326 Pfam Ribosomal protein S5, C-terminal domain 247 317 IPR005324 GO:0003735|GO:0005840|GO:0006412
Dod03g0434 326 Hamap 30S ribosomal protein S5 [rpsE]. 147 323 IPR005712 GO:0003735|GO:0006412|GO:0015935
Dod03g0434 326 Gene3D - 237 325 IPR014721 -
Dod03g0434 326 PANTHER RIBOSOMAL S SUBUNIT 11 326 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0434 326 Pfam Ribosomal protein S5, N-terminal domain 170 234 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0434 326 SUPERFAMILY Ribosomal protein S5 domain 2-like 240 318 IPR020568 -
Dod03g0434 326 TIGRFAM rpsE_bact: ribosomal protein uS5 169 323 IPR005712 GO:0003735|GO:0006412|GO:0015935
Dod03g0434 326 ProSiteProfiles S5 double stranded RNA-binding domain profile. 170 233 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0434 326 ProSitePatterns Ribosomal protein S5 signature. 187 219 IPR018192 -
Dod03g0434 326 Gene3D - 161 231 - -
Dod03g0434 326 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 11 326 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0434 170 310 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 5.00e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0434 K02988 - gmx:100787105 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0434 03 5308976 5311551 Dod03g0434 03 5308976 5311551 ECH