Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0412 ATGGCACAAGAGCATTATTTTTCTAAGGAATGGAAAACCATCCCAAATGCTGTGACCGACACTGAGAGCTCCAACGGCGGTTTCGATTGCAACATCTGCTTGGACTTTGTTCATGAACCGGTAGTGACCCTCTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTTGCACCCGATGAGCCCCCACAGTGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCACTCTATGGCCGAGGCCAGGCCCCTACCGATGGAAAACCATCATGTTGTGATGTTTTCGTACCACCAAGACCACCTGCTTCCAGTGCTCAAGCTCAATTGGCGGCATCATCTCAAAGTGGCCAGCAGCTTCCATACAGAAATCCTTATCAGGGTCAATATTTAGGCCCTCCTCTACACCGAGACGAGGATGATGCCGCTTCACAAATGCTAAATCTTGGTGGCACCATGACTCCAGGATCCCACTACCCTTCTTTGGTTGAGATGTTTGGAGAGATGGTTTATGCTAGAGTGTTTGGCAACTCAGAGAATTCGTATGCCTACCCCAATTCTTATCAGCTGAGGGGAAGTAATAGTCCTAGATTGAGAAGGCAAGAGATGGAGGCAGACAAGTCATTGAACAGAATCTCAATTTTTCTCTTTTGCTGCTTTCTTCTGTGTCTTATTGTCTTCTGA 714 0.4776 MAQEHYFSKEWKTIPNAVTDTESSNGGFDCNICLDFVHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPTDGKPSCCDVFVPPRPPASSAQAQLAASSQSGQQLPYRNPYQGQYLGPPLHRDEDDAASQMLNLGGTMTPGSHYPSLVEMFGEMVYARVFGNSENSYAYPNSYQLRGSNSPRLRRQEMEADKSLNRISIFLFCCFLLCLIVF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0412 237 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Dod03g0412 237 MobiDBLite consensus disorder prediction 113 133 - -
Dod03g0412 237 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Dod03g0412 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 90 IPR013083 -
Dod03g0412 237 MobiDBLite consensus disorder prediction 116 133 - -
Dod03g0412 237 SUPERFAMILY RING/U-box 27 89 - -
Dod03g0412 237 CDD RING-HC_AtRMA_like 28 78 - -
Dod03g0412 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod03g0412 237 SMART ring_2 30 76 IPR001841 -
Dod03g0412 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 3 237 - -
Dod03g0412 237 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0412 Dod-Chr3 4997286 4998269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0412 6 223 C3H Transcription Factor Family AT4G27470 37.118 7.65e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0412 K10666 - gmx:100816864 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1478 04 36456922 36459088 Dod03g0412 03 4997286 4998269 PCT