Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0397 ATGTACATAGCTTCCATGCGAAGGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATTCAGCACGCTAATACCCTGGCCTCAGATTTTCCGAGGGAGTATGACGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTCCTTTTTTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCTCTTGGCCTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGTCAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATTAGAGAATTTTATGCTGTCATATATCCCTCTTTATTACAACTTCAAAAAGGGGTCACCGATACAGAGGATAAAAAACAGAAGGCTGTTTGCATGGAGAGGTATCGAAAGAGAGATGATGAGGATCTCAAACAATGTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGGATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAACTGTAACCATGCCATGTGCCTGAAATGTTACCGAGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGCCTCAGGAGAGTGAACTCGGGTGATCTCTGGGTATTCACCGATAGCCGTGATGTAGTAGACATGGAGACAGTGACGAGGGAGAATCTCAAAAGACTTTTCCTGTACATAGATAAGTTGCCTCTGATCATTCCGGACTCTCTTTTCGACACTTACGACTCTCACCTGAGATAA 744 0.4382 MYIASMRRSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGSTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRKRDDEDLKQCSDIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLRRVNSGDLWVFTDSRDVVDMETVTRENLKRLFLYIDKLPLIIPDSLFDTYDSHLR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0397 247 SMART ring_2 151 188 IPR001841 -
Dod03g0397 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Dod03g0397 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Dod03g0397 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Dod03g0397 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 3 247 - -
Dod03g0397 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Dod03g0397 247 PANTHER RING FINGER PROTEIN 41, 151 3 247 - -
Dod03g0397 247 SUPERFAMILY RING/U-box 140 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0397 Dod-Chr3 4913829 4917574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0397 75 192 C3H Transcription Factor Family AT5G41350 31.148 6.25e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0397 K25840 - mnt:21395328 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1489 04 36512281 36515632 Dod03g0397 03 4913829 4917574 PCT