Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0376 ATGCGATTTGGGGGGTTTGTTGCGGCGATGATGGCGGCGGACGATGGATTTGACTTTGGAATGTTCGCCGGTGACGGCGGTGACGCTGCCGGTGACGATGATAAGCTCGCTATGGATATGGATTCCATTCTGAGCGTTCTTGACGAGGATCTCGACGCTCCCGAGAGTAGTCCTGAGGATTCTTCATTAAAAAATGTTTCACCAGGGGAATCTGGCATCATTGATGATTTTCAGTTTCAAAATGGGATTTTTGTGCTTGACTCTGAACATGAAAATTGGGGACTGCCATTACAGACTTGCTCTTCCCAAGTTGCTGGTTCTGGTGGTTTCAGGGACGCTTTCTCTGTGGTTGAAAGCAATGAGATTTGCGACTCAGAAAAGACAGGAGTTGTCAAATGCGAGATGTCTGCTTACGGTGTAGACACAGGTTTCCCTGAGTCAAATTCAAATAATATAGCAGATTTTGGAGACAATTTGGAATTGAAGCTGTGGAAGAATGAAGATGAGAGCCAGCTCAAGCATGTGGGGGATGATGTTGAACCTGAATATGCATCGCACAGCTCTATCATTGAAAACACTGATGTAAATTTCGAAGATTATGGAACTATTTTGGAAGAAATGATAGCAGTTTCTGGGCAACAGGAAAACGACTCGTGTACATCTTTTGAAATGTCATTAGTGGATCCCGACAGATCTATGCATGCTGCAACTTCTGCTGATCCTACTATTTTTCAAGGTTCCTATGTTCCCAGTGATTTTGGTGACTGCTATCTGTCTATGAACTGTTACCAGGGTATGGATGGTAAACCTGTTAACAACACTTTTGGTTGTTTGCCTAATGGTGTTTGTCCTCAGTTCTGGACAAATGAAGAAATGACGGGGAATATGAAGGTTGCAAAAATGGAGTTCTTTGGTCATACAACTTGTGCGAGCAGTGGCACTAATTCCAGCACTACTGGCAGGATATCTCTTCAAAATAGTCAATATCCATTATTGTTTCCTGGTAATGTGCTCTTTGGAGGCAAGAGATCAATGCAACCTTCAACTTGTGCTTCATATATCTCAAGTGAAGGCCAACCACTTTGTGTCAAAGCTGAAAGAGATGAACTGACTATGCCTTACCAAAATTCTTCTCACAGTGATGACACTGAGTTTAGTCTAGGCCAAGAGGTGAAACAAATAACTGGTACTTACCCATCTGTAGGATGTCAGAGTTATGAATTTTTCAAGCCTGAGCATAATGATACAGCTGTAAAAACTGAGAGAGCCAATTATAATCAAGATATTATTGATGGAACTTCTAATCAGTTTCCAGGATACATGGAAAATCTGAATTTAAAATCCTTCAACAGCTCTTTTTCCAATGGTCAGGCCTCAACTGGCCATGAGATGCAGTTTACTTGTGTTGCAAGTGAAGAAGCAGGCAAAATGATTCAACACCAAAGTATTGATACTCAACTATCTAAAGGAAGTGCTGAGAGATCCAATGGTGATGATGATTCTGATGTTTGTATTATTGAAGACATCAGTCACCCTGCACCTATAACCCAACCTGCAGAACTTGTGACTTCCCTTAATATGTCAAAATCTTTGAGATATACTTATATGCAACCTCAGATGGTTGAAGGCATAAGGCCAAAGGCACGTGACGAGCAATACATATTACGAGTTGCTTTGCAGGATCTATCCCAACCGAAGTCTGAAGTTAGTCCACCAGATGGACTGCTAGCAGTTCCTCTTTTACGACATCAGTTATGGTGTCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCTAGTTTATACTGCTCAGGTGGAATACTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCAACTATTGCTTTAATATTAAAGGAGAGACCACCAATGCTTAATAAGTGCAATAATGGTCAAAAAAGTGAATTAGAAACTTTGAATTTGGATGCGGATGATGATATGCTTCTTGAGGATGGGAGAGTGAAGAAAGATTCTGATGGAGGAGTGAAGAAAGATTCTGATGGTGGAGTGAAGAAAGATTATGATGGTGGAGTAAAGAAAGAATCTAATGTGTGTCAAGATTTGTTGAGTGGAAATCCAATTAAGACTATGAATTTGTCGATGCATATGAAAGGAAGGCCATCTGCTGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAGTGGGCCGAGGAGTTGCATAATAAGGTAACGTGCAAAGCTAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGGACAAAAGATCCTTATGAGCTTGCCAATTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGGTGAAAAAGGAATGTATGAAGATAACACTGTGCCAAGTAGGAAAAGGAAATGCCCCCCTAGTTCTAGTAGAGGTGGCAAGAAGGGATTGGACAGCACCATGCTGGAGGCTGTTGCTCGCCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCTTATCGGGAACACCGATACAGAATGCTATCGATGATCTCTATAGTTACTTTAGATTTCTAAGATATGACCCTTATGCTGTGTACACATCATTCTGTTCTACAATTAAGATCCCAATCAGCAGAAATCCATCAAAAGGATATAGAAAGCTACAAGCTGTATTAAAAACGATAATGTTACGTCGAACAAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCACCTAAGTTTGTAGAGTTGAAAAAAGTGGACTTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAAGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTCAACATTTTGTTAATGCTTCTGCGCCTTAGACAAGCTTGCGATCATCCTCTGCTAGTCAAGCGTTACAACTCTAACTCTCTTTGGAAATCTTCGGTTGAAATGGCAAAGAAGCTTCCTCAGGAAAAACAGTTAGCTCTTTTGAAATGTTTAGAGGCTTCGCTAGCCCTCTGTGGTATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCACGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAATTGCAAAATTCGACTTAGCATGACTTCCGTGTTTTCCAAAGCAACACTGAACAGTTCTCTTTCTGGCCAGTCTTGTGATAATTTGCCTGATTCCTCTGTTTCTGAAAGAGGAGAATTTGAGCCCTGTTCTGAGACTCAGTCATTTGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGTACTCATTGTCTAAACCAAAATCCCATAATTCCAACACGAATACTGTGCAGAGCACTTCCGGGGAAAGTACTGATTGCCTTGATAACTCTTCTGGTGCTGACAATGGGAAATCCTTCAATGATCTTCCTGATCGCCAAAATATGTCTGCTGAGAGAAGCTCTAATGATTCAGCCAATGCAGTAGGGGAGAAGGCTATAGTGTTTTCTCAATGGACGAGGATGTTAGATTTGCTTGAAGTGTGTCTTAAGAATTCTTCAATTCAGTATAGAAGGCTTGACGGAACAATGTCAGTCATGGCAAGGGATAAAGCTGTAAAAGATTTCAACACTCTCCCCGAGGTTTGTAAAGTATAG 3789 0.4157 MRFGGFVAAMMAADDGFDFGMFAGDGGDAAGDDDKLAMDMDSILSVLDEDLDAPESSPEDSSLKNVSPGESGIIDDFQFQNGIFVLDSEHENWGLPLQTCSSQVAGSGGFRDAFSVVESNEICDSEKTGVVKCEMSAYGVDTGFPESNSNNIADFGDNLELKLWKNEDESQLKHVGDDVEPEYASHSSIIENTDVNFEDYGTILEEMIAVSGQQENDSCTSFEMSLVDPDRSMHAATSADPTIFQGSYVPSDFGDCYLSMNCYQGMDGKPVNNTFGCLPNGVCPQFWTNEEMTGNMKVAKMEFFGHTTCASSGTNSSTTGRISLQNSQYPLLFPGNVLFGGKRSMQPSTCASYISSEGQPLCVKAERDELTMPYQNSSHSDDTEFSLGQEVKQITGTYPSVGCQSYEFFKPEHNDTAVKTERANYNQDIIDGTSNQFPGYMENLNLKSFNSSFSNGQASTGHEMQFTCVASEEAGKMIQHQSIDTQLSKGSAERSNGDDDSDVCIIEDISHPAPITQPAELVTSLNMSKSLRYTYMQPQMVEGIRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQLWCQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPMLNKCNNGQKSELETLNLDADDDMLLEDGRVKKDSDGGVKKDSDGGVKKDYDGGVKKESNVCQDLLSGNPIKTMNLSMHMKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELANYDVVLTTYSIVSMEVPKQPLVDKDDGEKGMYEDNTVPSRKRKCPPSSSRGGKKGLDSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKQLALLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKIRLSMTSVFSKATLNSSLSGQSCDNLPDSSVSERGEFEPCSETQSFDSSKIKAALEVLYSLSKPKSHNSNTNTVQSTSGESTDCLDNSSGADNGKSFNDLPDRQNMSAERSSNDSANAVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVMARDKAVKDFNTLPEVCKV* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0376 1262 Gene3D - 699 789 IPR038718 -
Dod03g0376 1262 MobiDBLite consensus disorder prediction 1152 1201 - -
Dod03g0376 1262 ProSiteProfiles Zinc finger RING-type profile. 1046 1085 IPR001841 -
Dod03g0376 1262 SUPERFAMILY RING/U-box 1043 1091 - -
Dod03g0376 1262 SMART ring_2 1046 1084 IPR001841 -
Dod03g0376 1262 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 418 1260 - -
Dod03g0376 1262 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 418 1260 - -
Dod03g0376 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1256 IPR027417 -
Dod03g0376 1262 MobiDBLite consensus disorder prediction 786 804 - -
Dod03g0376 1262 SMART ultradead3 576 907 IPR014001 -
Dod03g0376 1262 CDD DEXDc_SHPRH-like 580 930 - -
Dod03g0376 1262 Gene3D - 561 643 IPR038718 -
Dod03g0376 1262 Gene3D - 820 942 IPR038718 -
Dod03g0376 1262 MobiDBLite consensus disorder prediction 661 682 - -
Dod03g0376 1262 Pfam Zinc finger, C3HC4 type (RING finger) 1046 1082 IPR018957 GO:0046872
Dod03g0376 1262 ProSitePatterns Zinc finger RING-type signature. 1061 1070 IPR017907 -
Dod03g0376 1262 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 719 892 IPR014001 -
Dod03g0376 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1104 IPR013083 -
Dod03g0376 1262 Pfam SNF2-related domain 605 1007 IPR000330 GO:0005524|GO:0140658
Dod03g0376 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 930 IPR027417 -
Dod03g0376 1262 MobiDBLite consensus disorder prediction 786 820 - -
Dod03g0376 1262 Gene3D - 1105 1262 IPR027417 -
Dod03g0376 1262 CDD SF2_C_SNF 1207 1260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0376 Dod-Chr3 4450667 4460107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0376 478 1259 RAD5 or RAD16-like Gene Family AT1G61140 54.919 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod03g0376 SNF2_N 1.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0376 - - gmx:100805307 1593.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1520 04 37034765 37043623 Dod03g0376 03 4450667 4460107 PCT