Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0339 ATGAACGACCTATTCTCAAGCTCCTTCAAGAAATCCAGTGACTTGAAGGAGCAGCCCAACCTTGATGACGTGGAGGCCGGTAGGGAAAGTATCAATCTTGATAATTTCTTCGAAGATGTGAAGGATGTGAAAGAAGACATGAGAATGGTTGAGAAGCTTTATAGAAAATTGCAAGAGGCCAATGAAGAGACCAAAGTTGTACACAATGCTAAGACCGTGAAAGATCTCAGAGCCCGAATGGACAAAGATGTTGAGCAGGTCCTCAAACAGAATATGATATCAAGTGGAGAGAGTGAGAGTTTTCTGCAGAGAGCAATTCAAGAACAAGGAAGGGGTCAGATAATGGACACTATATCTGAGATTCAAGAAAGGCATGATGCTGATAAGGAAATAGAGAAGAACTTGATTGAGCTGCATCAGGTGTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAGGGCCAGCATCTGAATAACATAGAGAGTCATGTGGCACATGCTAGTTCTTTTGCTAGAAGAGGCACAGATCAACTTCAGGATGCTAGAGAGCATCAAAAGAGTTCCAGGAAGTGGGCTTGTTATGCCATGATTCTTGACATCTCATATGCAGAAGCATTCGGAATGCTTTGTTCTGAAATTCTTCAAGGAGGTGACCTTCCTGAAGCCAAGATGCCACATGACCAAGTTGTTCTGAAATTTTTGGATTCCCATAGAGCACTAACAGCAAGAGAATCAATTCCAAACATGACAATGACAATGTTGTAA 762 0.4213 MNDLFSSSFKKSSDLKEQPNLDDVEAGRESINLDNFFEDVKDVKEDMRMVEKLYRKLQEANEETKVVHNAKTVKDLRARMDKDVEQVLKQNMISSGESESFLQRAIQEQGRGQIMDTISEIQERHDADKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFARRGTDQLQDAREHQKSSRKWACYAMILDISYAEAFGMLCSEILQGGDLPEAKMPHDQVVLKFLDSHRALTARESIPNMTMTML* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0339 253 Gene3D - 113 205 - -
Dod03g0339 253 Gene3D - 29 112 - -
Dod03g0339 253 PANTHER SYNTAXIN-124-RELATED 6 90 - -
Dod03g0339 253 CDD SNARE_syntaxin1-like 117 178 - -
Dod03g0339 253 SUPERFAMILY t-snare proteins 31 173 IPR010989 GO:0016020|GO:0016192
Dod03g0339 253 MobiDBLite consensus disorder prediction 1 23 - -
Dod03g0339 253 SMART tSNARE_6 113 180 IPR000727 -
Dod03g0339 253 PANTHER SYNTAXIN 6 90 IPR045242 -
Dod03g0339 253 PANTHER SYNTAXIN-124-RELATED 90 199 - -
Dod03g0339 253 Coils Coil 40 63 - -
Dod03g0339 253 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 118 180 IPR000727 -
Dod03g0339 253 Pfam SNARE domain 156 196 IPR000727 -
Dod03g0339 253 PANTHER SYNTAXIN 90 199 IPR045242 -
Dod03g0339 253 Pfam Syntaxin 91 153 IPR006011 GO:0016020
Dod03g0339 253 Pfam Syntaxin 35 90 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0339 Dod-Chr3 4108215 4109432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0339 1 231 SNARE and Associated Proteins AT1G61290 45.570 7.99e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0339 K08486 - gmx:100818999 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0339 03 4108215 4109432 Dod03g0339 03 4108215 4109432 ECH
Dod04g1544 04 37301330 37302244 Dod03g0339 03 4108215 4109432 PCT