Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0330 ATGACGAGCTTCGCTTTCTTCCACCGTCTTTCTAGATCCTTCCGTGACCATCCCTCGCATCTTAAGCTTGTACTGCTCTGCACCACTGTAACTGGTGGTGGCCTTTTGGCTTACGGTGACGCTGGTGCATCTGAAGTGCCGGTGGTTACTGATGATAAGAAGAAAAAGGTGGTGGTGCTGGGAACTGGCTGGGCGGCGACTAGCTTCTTGAAGAATCTCAACAGTCCGAGATATGAGGTTCAGGTGGTGTCGCCTCGCAACTATTTCGCGTTCACTCCTCTGCTGCCTAGCGTTACGTGCGGCACCGTCGAAGCTCGCAGCATTGTTGAACCCGTTCGCAATATTGTTAACAAGAAGGCGGCGGATATTCAATTCAATGAAGCAGAATGTGTCAAGATTGATGCTGAAAACAGAAAAATATACTGTCGATCTAATATAAACAACAATTTGGATGGGAAGGAAGAATTTGCTGTGGACTATGACTACCTAATCATAGCTGTGGGAGCTAATGTCAACACATTTAACACTCCAGGAGTAGTGGAGAATTGCCACTTTTTGAAGGAAGTTGAAGATGCTCAGAAGATTAGAAGAACAGTTATCGACTGCTTTGAGAGGGCAAATTTGCCCAATGTAAATGAAGAAGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATATGGTCAGATTATATCCGGGGATTAAGGATTTAGTTAAAATTACGCTTCTGGAGGCAGGGGATCATATATTGAGCATGTTTGACAAAAGAATCACTGCGTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTGAAGGTGTCTGATAAAGAAATTTCCACTAAGGAACTGAAAAATGGAGGAGAAATTAAGACAATTCCGTTTGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGGCACAAATCGGTCAGGCTAGAAGGCGCGCTTTAGCTACTGATGAATGGTTGAGAGTTGAGGGCTGCAACAATGTGTATGCGCTTGGTGATTGTGCTACGATCAACCAGCGAAAAGTCATGGAGGATATTGCGGCGATCTTTAAGAAGGCTGACAAAGACAATTCTGGAACACTAACGGTCAAAGAATTTCAAGAGGTCATGGATGACATCTGTGAGAGATATCCTCAGGTAGAGTTATATCTGAAGAATAACCAGATGCGCAACATTGCTGATCTATTGAAGGAAGCAAAGGGAGATGCTAAGAAAGAATCAATTGAACTCAATATCGAGGAACTCAAGACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTGGCATCTCAGCAAGGCACTTACCTAGCCAAGTGTTTTAATCGTATGAAAGAGTGTGAAAAAACTCCAGAGGGTCCTCTCAGGTTCAGAGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTTTGGGAGGAGAGCAGACAGCAGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTGTGGTACTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAAGGCGTTAGTAGTTTCAGACTGGACTAGACGTTTTATTTTCGGGAGGGACTCGAGCAGCATCTGA 1743 0.4469 MTSFAFFHRLSRSFRDHPSHLKLVLLCTTVTGGGLLAYGDAGASEVPVVTDDKKKKVVVLGTGWAATSFLKNLNSPRYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVNKKAADIQFNEAECVKIDAENRKIYCRSNINNNLDGKEEFAVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPNVNEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDMVRLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKELKNGGEIKTIPFGMAVWSTGIGTRPFIKDFMAQIGQARRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVMDDICERYPQVELYLKNNQMRNIADLLKEAKGDAKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMKECEKTPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVSDWTRRFIFGRDSSSI* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0330 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Dod03g0330 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Dod03g0330 580 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Dod03g0330 580 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Dod03g0330 580 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
Dod03g0330 580 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Dod03g0330 580 Coils Coil 442 462 - -
Dod03g0330 580 Gene3D - 421 579 - -
Dod03g0330 580 Gene3D - 48 407 - -
Dod03g0330 580 PANTHER NAD(P)H DEHYDROGENASE B2 4 580 - -
Dod03g0330 580 SMART efh_1 382 410 IPR002048 GO:0005509
Dod03g0330 580 PANTHER NADH DEHYDROGENASE 4 580 IPR045024 GO:0003954|GO:0006116
Dod03g0330 580 Pfam EF hand 383 408 IPR002048 GO:0005509
Dod03g0330 580 SUPERFAMILY EF-hand 343 467 IPR011992 -
Dod03g0330 580 SUPERFAMILY FAD/NAD(P)-binding domain 215 375 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0330 Dod-Chr3 3949076 3954018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0330 1 580 Chloroplast and Mitochondria Gene Families AT4G21490 73.242 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0330 K03885 - gmx:100797657 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1556 04 37477427 37482868 Dod03g0330 03 3949076 3954018 PCT