Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0321 ATGGTAAGAAAATCGAGTGAGGTGGAGGAGGAGCCTCTGCCGGACCACCTGCGGTGCAGCCGCACCGACGGGAGGCAATGGCGGTGCCGGCGGCGCGTGATGGACAACCTCAAACTCTGCGAGATTCACTACCTTCAGGGTCGCCACCGCCAGTTCAAGGAGAAGGTCCCTGACTCACTGAAGCTTAAGAGAACAACGGGCAACAAGAAGAAAGGGCACAGCTCCAAAAACGACGTCGTTTTGAAGAGCATGGAAATTAGGGCGAGGATTTCTAAGATTATGAGGAGGAAGAAGAAGAAGCGGAAATCAACGGAGGGTTCTGACTCAGCAACAGCATTGGTTGGTGTTGGTGTTGATGTTGTTTCTAAGAAGAAGAAGAAGAAGCGTGATATGCAGTTGGAGCTGATAAAGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAGGAAGAAGAGCGAGAAGGAGAAGGAGAAGGAGGAGAGAGAGGAGCTGCACCGTTATTACAGTGAGGGTGAGCTCAGGAGGGAATTGCCCAATGGTGTCATGGAGATTGCCCCTGCTCCTTCAACCCCACATGATTACACCAATGTGGGTTCCCATTTTGATGTCAAAGTTGGAATCTTTGATCATACTAGAGCTGTTACTACGCGTTACTTCAGGTCCAAGAATGTTGAAAGGCTCCCTGTTGGCAAGTTGCAGGTTGTGCCTTATGGAGTGAGCTTGAAGAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAAAGGAGTGATTCCTCGAATCTTATCAAGTGTAATAGCTGCCAGAAAGAGTTCTTCTGCATGGATTGCATTAAAGAACGGTATTTTGACACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTAGACAAACTTGCAACTGTAAAGATTGCTTGGCAATTCAATGCAAAGACAATGAAAGTAAGGAATATTTTGCTGGTAGAAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGTATGCTTCTTCCTGTACTAAAACGAATAAGTGAAGATCAGCATGCTGAGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAAAGTTTCTGATATTCTCATCAAGCAGGTCGAATTTGGGTGCAATGAGAAGAATTACTGCAATTACTGCAAAACACCCATCTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGCCTTTGCTTAAGTTGTTGCCAGGAATTAAGTCAAGGGGGCACCTCTGAAGAAATTAACTCTTCTTTGTCCAAGCTACCTGACAAAATGAACGGTTGCATTGCCAGTGAAAGCCACCTTTTGGATGATGAGGCCATATCTCGCGGAAATTTAACGGCCTCTTCAATGTTGCCTGAATGGCCAAGTCATGATGGTACTGACAGTGTATCATGTCCTCCTACAGAGCTAGGCGGTTGTGGTGATGGCCACCTTGATTTGAGATGTGTTTTTCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAGGGAGAAGAAATAGTTTGCAGCTATGACTTTCCCGAAATTTTGGATAGAAGTTCAAGCTGCTCACTGTGTTTTGACAAAGATAAAAAACCTAACAGGTACAAGCAAATTCAAGAAGCAGCTCGAAGAGAAGATTCTAATGATAATTGCTTGTTTTATCCTACAGTATTGGACATCACTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGCACTCCAAAGTACATCAAACCTCAGTTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTAGATTGGTGTGAGCTGCAAATCTGCCACTGGGGAGTACAAGACATGACGTGGGACCATATGTCTATATTTCATATGGACTGTGCTGACAAAGAAGCTGATTCTGTGACAAAACTCTGTTACGACTCCTATGATGTGGTTAACATTATGGCACATACCACTGACGTCCCTCTGTCTACAGAACAGCTTACCAAAATACGCAAACTATTGAAAAAGCACAAAGCTTTATGTAGAAGGGAGTCTTCCAAAGTTACTACTGCTCATGCTGAAGACATGGAACAAAAAGTAATTCAAAGTGGGGGAAAAGAAGGAGTGGACTTTTTCAGGAGAGTCAATAGAACATCTTGTATCCCAACTGAAACCAAAACAACAACTGGAGAATGTGCTTTAGATTCTGATACTGAAAAGGCACAAAGCTCTTCACCTCTCTGCAGGACAGTTCCAAGCTCTGAAATGTCTCCAGATCATGCTCATAGAAAAACCTTTGAAAACTCAAACGTTGATAAAAGCAAGTTTACTGAGAATTCCAGTGCGCAGTGGGATGTCTTTCGAAGAGAAGATGTACCAAAGCTTTTGGAATATCTCAAAAGGCACCATGATGAGTTTTCTTATACCCATGACTGTGACGAGGAGATGGTTCATCCAATTCTTGATCAGAGCTTCTTTCTTGACAATACTCACATAAAGAGACTTAAGGAGGAATTTAACATTGAACCATGGTCTTTTGAGCAACATGTTGGAGAAGCTGTCATAATTCCTGCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTGGTACTGGAATTTATGTCCCCTGAGAATGTTACTGAGTGCATCCAATTGATTGATGAAGTTCGTCTGCTTCCAAAAGACCATAAGGCAAAAGTGGACAAGTTGGAGGTAAAGAAAATGGCCCTCTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAAAACTTGA 2835 0.4261 MVRKSSEVEEEPLPDHLRCSRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQFKEKVPDSLKLKRTTGNKKKGHSSKNDVVLKSMEIRARISKIMRRKKKKRKSTEGSDSATALVGVGVDVVSKKKKKKRDMQLELIKMVLQREVEKKKRKKSEKEKEKEEREELHRYYSEGELRRELPNGVMEIAPAPSTPHDYTNVGSHFDVKVGIFDHTRAVTTRYFRSKNVERLPVGKLQVVPYGVSLKKGKRKKCHWCQRSDSSNLIKCNSCQKEFFCMDCIKERYFDTQNEVKMACPVCRQTCNCKDCLAIQCKDNESKEYFAGRSRVDRILHFHYLICMLLPVLKRISEDQHAELETEAKIKGKKVSDILIKQVEFGCNEKNYCNYCKTPILDLHRSCLSCSYSLCLSCCQELSQGGTSEEINSSLSKLPDKMNGCIASESHLLDDEAISRGNLTASSMLPEWPSHDGTDSVSCPPTELGGCGDGHLDLRCVFPLSWIKEMEVKGEEIVCSYDFPEILDRSSSCSLCFDKDKKPNRYKQIQEAARREDSNDNCLFYPTVLDITSDHFEHFQKHWGKGHPVVVRDALQSTSNLSWDPLVMFCAYLERSITRYENNKDLLEACLDWCELQICHWGVQDMTWDHMSIFHMDCADKEADSVTKLCYDSYDVVNIMAHTTDVPLSTEQLTKIRKLLKKHKALCRRESSKVTTAHAEDMEQKVIQSGGKEGVDFFRRVNRTSCIPTETKTTTGECALDSDTEKAQSSSPLCRTVPSSEMSPDHAHRKTFENSNVDKSKFTENSSAQWDVFRREDVPKLLEYLKRHHDEFSYTHDCDEEMVHPILDQSFFLDNTHIKRLKEEFNIEPWSFEQHVGEAVIIPAGCPYQIRNPKCCVHVVLEFMSPENVTECIQLIDEVRLLPKDHKAKVDKLEVKKMALYSMSTAIKEIRELTCKT* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0321 944 ProSiteProfiles Zinc finger RING-type profile. 249 295 IPR001841 -
Dod03g0321 944 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 645 943 IPR045109 GO:0032454|GO:0033169
Dod03g0321 944 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 626 IPR045109 GO:0032454|GO:0033169
Dod03g0321 944 Pfam JmjC domain, hydroxylase 792 888 IPR003347 -
Dod03g0321 944 ProSiteProfiles JmjC domain profile. 580 907 IPR003347 -
Dod03g0321 944 Pfam WRC 14 55 IPR014977 -
Dod03g0321 944 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Dod03g0321 944 PANTHER PROTEIN B160 9 626 - -
Dod03g0321 944 Gene3D Cupin 636 909 - -
Dod03g0321 944 SUPERFAMILY Clavaminate synthase-like 562 928 - -
Dod03g0321 944 Gene3D Cupin 543 635 - -
Dod03g0321 944 MobiDBLite consensus disorder prediction 144 164 - -
Dod03g0321 944 SMART cupin_9 615 907 IPR003347 -
Dod03g0321 944 Coils Coil 137 167 - -
Dod03g0321 944 PANTHER PROTEIN B160 645 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0321 Dod-Chr3 3870039 3875923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0321 18 91 GRF Transcription Factor Family AT5G53660 35.714 8.06e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod03g0321 JmjC 5.4e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0321 K15601 - gmx:100810673 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1565 04 37612684 37614275 Dod03g0321 03 3870039 3875923 PCT