Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g0307 | ATGGCGGCTCAGCTTCCGGAACATTTCAAGTGTCCGATTTCGCTGGAAATAATGTCGGACCCTGTCATCCTCTCATCAGGCCACACCTTCGACCGCTCCTCAATCCAACGGTGGCTAGACGCCGGACACCGCACCTGCCCAATTACCAAACTGCCCCTCGCCGATCACGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTATGCCCCTCTCCCTTCCGACCACCACCACAACCACCACCCTCCCTCTCCCTCCCAAGCCGAAACCCTAATCTCCGCCCTCACCTCCTCCTCTTCCTCCGCCTCCAAAATCGACTCTCTCAACCAACTCACCCGCCTCTCCAAACGCGACTCCTCCCTCCGCCGCCGCCTCGCCGACTCAGGAATCGTCCCGCCGCTCCTCTCCTGCGTCGATTCCGCCGTCGCCCTCCTCCGCGAGAAGGCCCTCTCGCTCCTCCTGAACCTCAGCCTCGACGATCACAACAAGGTCGGCCTCGTGGCCGATGGCGTCGTCTCCCGCCTCGTCGCCGTCGTCTCCTCCTCCTCAGCCTCCCCCGACTGCCGCGCTGTTGCCGCCACCACGCTCACCAGCCTCGCCGTCGTGGAGGTCAACAAGGCCACTATCGGCGCGTATCCTCACGCGATCGAATCCCTCGTGTCCCTCGTCAGCGACGGGAAGGGAAGAGAGAAGAAAGAAGCTGCGACGGCTCTCTACGCTCTCTGCTCCTTCCCCGACAACCGGCGGAGGGCGGTGGAGTGCGGGGCGGTGCCGGTACTCCTTCGGAGCGCCGATTCTGGGCTCGAGAGAGCCGTTGAGGTTGTTGGGGTTCTGGCGAAGTGCAAAGAAGGGAGGGAGCAGATGGAGAGGTTCCATGGGTGTGTTCAGATTCTGGGTCGTGTTTTGAGCAATGGAAGCTCGAGGGGTGTTCAGTACGCGCTTCTGGCTCTTAACTCTCTCTGTTGTTGCAGTGAATGTGCTGCTCTGGAAGCCATCAGAGAAGGGGTTTTGGAAACGTGTGTTGGGTTGCTGGAGGATGATAATGAGAAGGTGAGGAGGAATGCTTCCAGTTTGCTTCAGGTTCTGCGTGGCAATGGAATTTGA | 1113 | 0.6056 | MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLADHASLIPNHALRSLISNYAPLPSDHHHNHHPPSPSQAETLISALTSSSSSASKIDSLNQLTRLSKRDSSLRRRLADSGIVPPLLSCVDSAVALLREKALSLLLNLSLDDHNKVGLVADGVVSRLVAVVSSSSASPDCRAVAATTLTSLAVVEVNKATIGAYPHAIESLVSLVSDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSADSGLERAVEVVGVLAKCKEGREQMERFHGCVQILGRVLSNGSSRGVQYALLALNSLCCCSECAALEAIREGVLETCVGLLEDDNEKVRRNASSLLQVLRGNGI* | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g0307 | 370 | Gene3D | - | 89 | 272 | IPR011989 | - | |
| Dod03g0307 | 370 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Dod03g0307 | 370 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 74 | IPR013083 | - | |
| Dod03g0307 | 370 | ProSiteProfiles | U-box domain profile. | 4 | 78 | IPR003613 | GO:0004842|GO:0016567 | |
| Dod03g0307 | 370 | SUPERFAMILY | RING/U-box | 3 | 72 | - | - | |
| Dod03g0307 | 370 | SMART | arm_5 | 162 | 204 | IPR000225 | GO:0005515 | |
| Dod03g0307 | 370 | SMART | arm_5 | 284 | 325 | IPR000225 | GO:0005515 | |
| Dod03g0307 | 370 | SMART | arm_5 | 208 | 246 | IPR000225 | GO:0005515 | |
| Dod03g0307 | 370 | SMART | arm_5 | 121 | 161 | IPR000225 | GO:0005515 | |
| Dod03g0307 | 370 | SMART | arm_5 | 326 | 367 | IPR000225 | GO:0005515 | |
| Dod03g0307 | 370 | PANTHER | U BOX DOMAIN-CONTAINING | 2 | 368 | - | - | |
| Dod03g0307 | 370 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 2 | 368 | - | - | |
| Dod03g0307 | 370 | CDD | RING-Ubox_PUB | 9 | 50 | IPR045210 | - | |
| Dod03g0307 | 370 | Gene3D | - | 273 | 367 | IPR011989 | - | |
| Dod03g0307 | 370 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Dod03g0307 | 370 | SUPERFAMILY | ARM repeat | 92 | 365 | IPR016024 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod03g0307 | Dod-Chr3 | 3568591 | 3569932 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod03g0307 | 1 | 367 | U-box Gene Family | AT4G21350 | 61.186 | 7.00e-151 | 429 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g0307 | - | - | vvi:100855109 | 430.639 |