Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0263 ATGCAGGATATTATCTTCACCTCTTTTGATAGCAGGAGGAGTTTTCTTATGGAGATTTCATCCATCAGAGAGTTACCTGAACTGGGTATAATGGAGGATCCTAGCTTTCTCCATCAGTGGCACTTAAGCTCTATCGATACTTCTACCTTAGCAGCTGCTACTTTTGGAGAGACCTTACAAAAGCATTCATTCTCTAACTCAAACTTCAGCCCCAAAACTTGCATGGAAACTACTACACCAACTGTAATTGAAAGACCATCAAAACAGCTCAAAAGCAACAGCTGGAATCACAACAGGAGTCCTCAGACATCAGAGTCACAATTTGGTTCTTGCTCATCAAATCTTCTTTCATTTGTTGATACGAATTACACAAGTCAACTGGGACTAGTGAAGCCTAAGGTGGAGATGTTGATGAGTCCTAAAATAGATAGCACAACTCCTACTCCTGCAGACATGTTGATCTCTCAAGGAACATTGGGGATTAATCAAAACTATGTCTTCAAGGCCTGCCATGAGGCCAATAATATTGGGGCACGGCCTAAACTTTCTCAACCTCATGACCACATAATAGCTGAAAGGAAGCGTCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGACAAAGCATCTGTTCTTGGAGATGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGAAAGAAAACTGTGGAATCTGTGGTAATTGTGAAGAAGTCTCAACTATCTAATAATGATGCAGAAGACTCTTGTTCTGACACTGACGAGGCACTGCCCGAAATTGAAGCAAGATTTTCCGAAAGGAATGTGCTGATAAGAGTTCACTGCGAGAAGAATAGAGGGGTTATAGAGAAAGCAATCAGCGAGATTGAGAAGCTCCACCTAAAAGTCATCAATAGCAGCGCCTTGACATTCGGGACTTTTGCCCTTGATATAACCGTTGTTGCTCAGATGGATAAGGAGTTCTCCATGACAGTGAAGGATCTTGTGAGGAGCCTACGCTCAGCTTTTGCATCTTTCATGTGA 1080 0.4278 MQDIIFTSFDSRRSFLMEISSIRELPELGIMEDPSFLHQWHLSSIDTSTLAAATFGETLQKHSFSNSNFSPKTCMETTTPTVIERPSKQLKSNSWNHNRSPQTSESQFGSCSSNLLSFVDTNYTSQLGLVKPKVEMLMSPKIDSTTPTPADMLISQGTLGINQNYVFKACHEANNIGARPKLSQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQNRKKTVESVVIVKKSQLSNNDAEDSCSDTDEALPEIEARFSERNVLIRVHCEKNRGVIEKAISEIEKLHLKVINSSALTFGTFALDITVVAQMDKEFSMTVKDLVRSLRSAFASFM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0263 359 CDD bHLH_AtNAI1_like 187 258 - -
Dod03g0263 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Dod03g0263 359 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 18 358 - -
Dod03g0263 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 247 IPR036638 GO:0046983
Dod03g0263 359 SMART finulus 189 238 IPR011598 GO:0046983
Dod03g0263 359 Pfam Helix-loop-helix DNA-binding domain 188 233 IPR011598 GO:0046983
Dod03g0263 359 MobiDBLite consensus disorder prediction 82 109 - -
Dod03g0263 359 PANTHER BHLH TRANSCRIPTION FACTOR 18 358 - -
Dod03g0263 359 Gene3D - 180 248 IPR036638 GO:0046983
Dod03g0263 359 Coils Coil 222 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0263 Dod-Chr3 2780960 2785070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0263 17 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.845 3.17e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g0263 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0263 - - aprc:113852973 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0263 03 2780960 2785070 Dod03g0263 03 2780960 2785070 ECH
Dod04g1608 04 38179270 38181024 Dod03g0263 03 2780960 2785070 PCT