Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0246 ATGGGGAGAGGAAAAATTGAGATTCGAAGGATCGACAATTCCAGCAACCGGCAAGTGACTTTCTCAAAGAGAAGACATGGATTGATGAAGAAAGCTAGAGAATTATCCATTCTCTGTGATGCAGAAGTTGGATTAATTGTGTTCTCGAGCACTGGCAGGCCTTATGACTATGCAAGCACCAGTATGAAGTCGATTTTTGAACGCTACAATAAGCTAACAGAGGAACATCAACTGTTGGATCCGATTTCAGAAGTCAAGCTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAATTACAGCACTTGCAAGAATGCCACAGCAGGCAATTGATGGGTGAAGAACTTTCTGGTTTGGGTGTTAAAGAACTACAAAATCTGGAAAATCAACTGGAGATGAGTTTAAAGAGTGTTCGCATGAAAAAGGAAAATCTCATTCATCAAGAAAATGCAGAACTCCATGAAAAGGTGGACTTCTTCCAAAAAGAAAATGCAGAGCTACAAAAGAAGATTACAGCTCCATTACAACAAAAGCTGACTATGCGAGAATCAGAAATGGTTACCATTTCTGAGAAGCTGTCAACAACTTGTCCTACTAATAATCAAACTTCTATCGGTAGGATCTTGTACTTCAACAACCTTATTTGTTTCATGCAATAA 657 0.3957 MGRGKIEIRRIDNSSNRQVTFSKRRHGLMKKARELSILCDAEVGLIVFSSTGRPYDYASTSMKSIFERYNKLTEEHQLLDPISEVKLWQTEAASLRQQLQHLQECHSRQLMGEELSGLGVKELQNLENQLEMSLKSVRMKKENLIHQENAELHEKVDFFQKENAELQKKITAPLQQKLTMRESEMVTISEKLSTTCPTNNQTSIGRILYFNNLICFMQ* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0246 218 Coils Coil 85 105 - -
Dod03g0246 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod03g0246 218 Coils Coil 120 143 - -
Dod03g0246 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod03g0246 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod03g0246 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod03g0246 218 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0246 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod03g0246 218 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 172 - -
Dod03g0246 218 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Dod03g0246 218 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Dod03g0246 218 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Dod03g0246 218 Coils Coil 149 169 - -
Dod03g0246 218 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0246 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod03g0246 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0246 Dod-Chr3 2525871 2532291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0246 1 195 MADS-box Gene Family AT4G37940 60.714 8.51e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod03g0246 K-box 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0246 K09264 - gmx:100808145 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0246 03 2525871 2532291 Dod03g0246 03 2525871 2532291 ECH
Dod04g1625 04 38344874 38351367 Dod03g0246 03 2525871 2532291 PCT