LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g0233	ATGGATACTTCGAATCAGCAGAGATTGCAAGAAGGACCCTTTGAGGATGTTGAAGGCCAACGACAACAACAACAACAACAACAGCAACAGCAACAAGTGGTGGTGGTTCCTATGGGGGTTGATGATGGGATGTTGAACCCTTCACAGTATGGTACTAATGGAATTCCTCATGAACATGATGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTCGTGTGAGTTCCGGGTTATGTGGGGCCAGTGCTTCTCCTGTTCGGTCTCGAGCCAGTGAGCTCACCATTGCTTTTGAAGGCGAGGTTTATGTTTTCCCAGCTGTTACCCCTGAAAAGGTGCAGGCTGTATTGTTACTCTTGGGAGGGCAAGAGATGCCCATCAGTGCCCCCAGCTCTGATTCTTCATTGCAGCAGAACTGTCAGAACATTCTGGGAATAAATGATGCTTCCAGAAGTTCAAAGCTTGCACAGAGAATTGCATCACTTGTCAGGTTTCGTGAAAAGCGAAAAGAAAGATGCTTTGAGAAAAAAATTCGGTACACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCACTGAAGGAAGGCTATAAATCTCCTGCTGAAAACTGGGATTCAAGCAATGGTGCTCCATGTCCACAGTCTACTGAACGTAGATGTCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGCAGAGGACCAGCTGGTCCAAGATCTCTGTGCAATGCCTGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGCAAGGGTCACTTTCGAACAAAATGAGCTGGATACTTCAGCTGATATAAAGGCTTCAACATCGGAACCAGAAAACTCTTGTCCTGACCAAAACAAGGCAGTAAGCCTAGAGGAAACTAAACCTGCGCCAGCTGATTCCAGACAACATGAGATGAAGAATGAGCAGTATATACTTGAAGCTGCTGAAGCAGTTACTGATGATTTATCCATCCAAGTGGAGAATCATGCTCTCAGTACACATCAAGAGGACAATAATCTCGAAGATCTGGCTGATGCTTCTGGGACAGAATTTGAGATTGCTGCAGGTTTTGATGAGCAGGTTGACATTGATGATTCCAACATGAGGACTTACTGGCTATGA	1179	0.4521	MDTSNQQRLQEGPFEDVEGQRQQQQQQQQQQQVVVVPMGVDDGMLNPSQYGTNGIPHEHDVEEEEEEEEEEEEEEGRVSSGLCGASASPVRSRASELTIAFEGEVYVFPAVTPEKVQAVLLLLGGQEMPISAPSSDSSLQQNCQNILGINDASRSSKLAQRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEGYKSPAENWDSSNGAPCPQSTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAARVTFEQNELDTSADIKASTSEPENSCPDQNKAVSLEETKPAPADSRQHEMKNEQYILEAAEAVTDDLSIQVENHALSTHQEDNNLEDLADASGTEFEIAAGFDEQVDIDDSNMRTYWL*	393

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g0233	392	ProSiteProfiles	GATA-type zinc finger domain profile.	224	280	IPR000679	GO:0006355\|GO:0043565
	Dod03g0233	392	MobiDBLite	consensus disorder prediction	60	76	-	-
	Dod03g0233	392	MobiDBLite	consensus disorder prediction	1	35	-	-
	Dod03g0233	392	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	226	278	-	-
	Dod03g0233	392	Gene3D	-	223	283	IPR013088	GO:0006355\|GO:0008270
	Dod03g0233	392	SMART	tify_2	90	125	IPR010399	-
	Dod03g0233	392	MobiDBLite	consensus disorder prediction	287	306	-	-
	Dod03g0233	392	PANTHER	GATA TRANSCRIPTION FACTOR 28 ISOFORM X1	22	383	-	-
	Dod03g0233	392	MobiDBLite	consensus disorder prediction	1	87	-	-
	Dod03g0233	392	ProSitePatterns	GATA-type zinc finger domain.	230	257	IPR000679	GO:0006355\|GO:0043565
	Dod03g0233	392	PANTHER	GATA TRANSCRIPTION FACTOR 28	22	383	IPR045280	GO:0006355
	Dod03g0233	392	CDD	ZnF_GATA	229	272	IPR000679	GO:0006355\|GO:0043565
	Dod03g0233	392	Pfam	GATA zinc finger	230	266	IPR000679	GO:0006355\|GO:0043565
	Dod03g0233	392	Pfam	CCT motif	161	202	IPR010402	GO:0005515
	Dod03g0233	392	MobiDBLite	consensus disorder prediction	287	322	-	-
	Dod03g0233	392	ProSiteProfiles	Tify domain profile.	90	125	IPR010399	-
	Dod03g0233	392	Pfam	tify domain	94	124	IPR010399	-
	Dod03g0233	392	ProSiteProfiles	CCT domain profile.	161	203	IPR010402	GO:0005515
	Dod03g0233	392	SMART	GATA_3	224	277	IPR000679	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g0233	Dod-Chr3	2323204	2328166	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g0233	96	293	Tify Gene Family	AT1G51600	53.659	1.72e-65	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Dod03g0233		CCT	6.3e-14	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g0233	-		-	adu:107468732	498.434