Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0226 ATGACGAAACCGAAGATGGAACTAAAAAAGATAGACAACATTGCAGCGAGGCAGGTTACCTTTAGTAAGAGGAGGAGAGGGCTTTTCAAGAAGGCTCAGGAGCTTTCAACTCTTTGTGATGCTGAGATTGCTATCATTGTCTTTTCCGATAATGGCAAGCTCTTCGAATACCCTAACTCAAGGGTGCAGCAGTTACTTGAAAAGTACGATCTACATACAAGCATTTGCAGATTACAACAACTACCTGAAGAAATGCCGCTTGAGAAGGACACCTACAACTACTACATGATGCGCAAGGAACTGGCAGATAAGACTCTTGATCTGAGGCGGTTGAATGGGGAGGAGCTGCAAGGATTGGGGATTCAGGAATTACAGAAACTAGAGAAACTAATAGGAAAAGGTTTGAGCCGTGTTTCAAAAGCAAAGGATGAAAGTCTTAGAAAGGATATCAGTGAGCTCAAGAAAAAGGGAGTTGAACTAGCTGAAGACAACCGACGACTGAAACAGACACGAAGTCTTGCAAACGATCAAGGGCAGTCATCAAAGTCAAGCATGATTCGCAGCGGTCCATCAAACATTGCTCATCAAGACTCGGATAATTATGATGCTTCCCTCAACTTGGGGTTAGTTTTTACTTTGTGA 642 0.4299 MTKPKMELKKIDNIAARQVTFSKRRRGLFKKAQELSTLCDAEIAIIVFSDNGKLFEYPNSRVQQLLEKYDLHTSICRLQQLPEEMPLEKDTYNYYMMRKELADKTLDLRRLNGEELQGLGIQELQKLEKLIGKGLSRVSKAKDESLRKDISELKKKGVELAEDNRRLKQTRSLANDQGQSSKSSMIRSGPSNIAHQDSDNYDASLNLGLVFTL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0226 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Dod03g0226 213 Coils Coil 150 170 - -
Dod03g0226 213 Pfam K-box region 93 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0226 213 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Dod03g0226 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod03g0226 213 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 184 - -
Dod03g0226 213 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0226 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod03g0226 213 Gene3D - 15 74 IPR036879 GO:0003677|GO:0046983
Dod03g0226 213 MobiDBLite consensus disorder prediction 164 198 - -
Dod03g0226 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod03g0226 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod03g0226 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod03g0226 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod03g0226 213 MobiDBLite consensus disorder prediction 171 198 - -
Dod03g0226 213 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0226 Dod-Chr3 2274600 2285297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0226 1 211 MADS-box Gene Family AT2G22540 42.917 1.37e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod03g0226 K-box 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0226 - - ahf:112786765 226.098