Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0206 ATGTCCCAATCGGAGAGCAAGAAGAAGAAGCAGCACAAGCACAAACAGCAAGATGATGAAGGGGGAGAGGAAGGAGAACAACCACAAGCACAAGCAGCTCCTGGTGGTGCAGAGAGGGAGTTCCTGATAAAGCCACAGAGCTACACACCGGCAATCGAGACGTCGGAGTGGCCCATCCTGCTGAAGAACTACGCCCGGCTCGAACGTGCGGACTGGGCACTACACTCCCCTGCCGTCGGGCGCCCTCCCCTCATCTCCGCCGTCAAGCGCCAGCTCCGCATCCGAACCATCTACGAGAGTAAGCTCCTTGAGTATGACCCTGATCGCCACTTGGTTGTTTTCTGGATTTCTTGTGAGGCTGGCACCTATGTTAGGACCATGTGTGTTCATCTGGGCTTGATTCTCGGTGTGGGTGGGCACATGCAGGAGCTTAGGAGGGTGAGGTCTGGGATCATGGGTGAGAGGGATAACATGGTTACTATGCATGATGTCATGGATGCTCAGTGGGTTTATGACCATTACAGGGATGAGACTTACCTCAGGAGGGTTGTTATGCCCCTTGAGGTGCTCTTGACTAGTTACAAGAGGCTTGTTGTTAAGGACTCTGCTGTCAATGCTATTTGCTATGGTGCCAAGCTCATGATCCCCGGGCTCCTTAGGTTTGAGAATGATATTGAGGTTGGGGAGGAGCTTGTGCTCATGACCACTAAGGGGGAAGCCATTGCTCTTGGCATTGCTGAGATGACCACTGCCGTTATGGCCACCTGTGATCATGGCGTGGTGGCTAAGATCAAGAGGGTTGTCATGGATCGAGATACCTATCCCCGGAAGTGGGGCTTGGGCCCCAGGGCGGCCATGAAGAAGAAGTTGATTGCTGAGGGCAAGCTGGATAAGCATGGGAAGCCCAATGACAAGACTCCGAAAGAGTGGCTGAGGAATGTTGTTGTGCCTGCTGGTGAGGATAGCACCATTGCCGGTATGGCTGCTGCTCCTGAAGTGGCTGCTGTGGAGGATAAGGAGAAGAAGGTTACGAACGAGGAAAATGGGGAAGGGAAGAAGCGGAAGAAACACGAAAGCGGAGATAGCCCTGCTTCTCATCCTGCTAAGAAGGTGAAAGTTGATGAGGTTGAGAAGGAAGAAAAGGTGAAGCTTAAGAAAGTAAAAGATGGGGATGTGGAGGTTGAGAAGAAAGAGAAGAAAAAGAAGAAGAAGAAGGACAAAGAAGAGAATGGCGAAGTGGCATCTTCAGATGAGGAGAGAACTGGAAAAGAGAAGAAAAAGAAGGACAAGGAAGGGGTCGAAGACGGTTCGCCAGATGTAGACAGGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCCAAAGATAAAGGCGATGCTGCAATAAGTAGTGGAAAGGATGATAGTAATGCAGATAGGAGTGAAAAGAAGCATAAGAAAAAGAAGAACAAGGATGCTGAGGAAGAGTAG 1473 0.5031 MSQSESKKKKQHKHKQQDDEGGEEGEQPQAQAAPGGAEREFLIKPQSYTPAIETSEWPILLKNYARLERADWALHSPAVGRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGERDNMVTMHDVMDAQWVYDHYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEELVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRAAMKKKLIAEGKLDKHGKPNDKTPKEWLRNVVVPAGEDSTIAGMAAAPEVAAVEDKEKKVTNEENGEGKKRKKHESGDSPASHPAKKVKVDEVEKEEKVKLKKVKDGDVEVEKKEKKKKKKKDKEENGEVASSDEERTGKEKKKKDKEGVEDGSPDVDRSEKKKKKKKDKEAKDKGDAAISSGKDDSNADRSEKKHKKKKNKDAEEE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0206 490 SUPERFAMILY Pseudouridine synthase 76 192 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod03g0206 490 SMART pua_5 195 269 IPR002478 GO:0003723
Dod03g0206 490 Gene3D - 64 150 - -
Dod03g0206 490 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 65 489 - -
Dod03g0206 490 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 3 68 - -
Dod03g0206 490 MobiDBLite consensus disorder prediction 334 490 - -
Dod03g0206 490 Pfam PUA domain 195 267 IPR002478 GO:0003723
Dod03g0206 490 MobiDBLite consensus disorder prediction 1 38 - -
Dod03g0206 490 SUPERFAMILY PUA domain-like 194 275 IPR015947 -
Dod03g0206 490 ProSiteProfiles PUA domain profile. 194 269 - -
Dod03g0206 490 Pfam tRNA pseudouridylate synthase B C-terminal domain 125 191 IPR032819 -
Dod03g0206 490 Gene3D PUA domain 174 314 IPR036974 GO:0003723
Dod03g0206 490 TIGRFAM unchar_dom_2: uncharacterized domain 2 190 266 IPR004521 GO:0003723
Dod03g0206 490 MobiDBLite consensus disorder prediction 331 490 - -
Dod03g0206 490 MobiDBLite consensus disorder prediction 1 22 - -
Dod03g0206 490 TIGRFAM CBF5: putative rRNA pseudouridine synthase 79 279 IPR004802 GO:0006396
Dod03g0206 490 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 65 489 IPR004802 GO:0006396
Dod03g0206 490 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 3 68 IPR004802 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0206 Dod-Chr3 2140164 2141959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0206 61 372 NAC Transcription Factor Family AT3G57150 77.244 1.72e-155 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0206 K11131 - gmx:100806355 523.472