Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0204 ATGTCCCAATCGGAGAGCAAGAAGAAGAAGAAGCAGCACAAGCACAAACAGCAAGATGATGAAGGGGGAGAGGAAGGAGAACAACCACAAGCACAAGCACCTCCTGGTGGTGCAGAGAGGGAGTTCCTGATAAAGCCACAGAGCTACACACCGGCAATCGAGACGTCGGAGTGGCCCATCCTGCTGAAGAACTACGCCCGGCTCAACGTGCGGACTGGGCACTACACTCCCCTGCCGTCGGGGTACTCACCGCTGAAGCGGCCCCTCCCTGAGTACCTCAAGTACGGCATCCTCAACCTCGACAAGCCCTCCAACCCTTCCTCCCACGAGGTCGTCGCCTGGATCAAGCGCATCCTCCGCGTCGACAAGACCGGCCACAGCGGCACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACCCGCCTCGTCAAGTCCCAGCAGGGCGCCGGCAAGGAGTACGTCTGCGTCGCCCGCCTCCACTCCGCCGTCCCCGACCCCTCCAAGGTCGCCCGCGCCCTCGAGTCCCTCACCGGCGCCGTCTTCCAGCGCCCTCCCCTCATCTCCGCCGTCAAGCGCCAGCTCCGCATCCGAACCATCTACGAGAGTAAGCTCCTTGAGTATGACCCTGATCGCCACTTGGTTGTTTTCTGGATTTCTTGTGAGGCTGGCACCTATGTTAGGACCATGTGTGTTCATCTGGGCTTGATTCTCGGTGTGGGTGGGCACATGCAGGAGCTTAGGAGGGTGAGGTCTGGGATCATGGGTGAGAGGGATAACATGGTTACTATGCATGATGTCATGGATGCTCAGTGGGTTTATGACCATTACAGGGATGAGACTTACCTCAGGAGGGTTGTTATGCCCCTTGAGGTGCTCTTGACTAGTTACAAGAGGCTTGTTGTTAAGGACTCTGCTGTCAATGCTATTTGCTATGGTGCCAAGCTCATGATCCCCGGGCTCCTTAGGTTTGAGAATGATATTGAGGTTGGGGAGGAGCTTGTGCTCATGACCACTAAGGGGGAAGCCATTGCTCTTGGCATTGCTGAGATGACCACTGCCGTTATGGCCACCTGTGATCATGGCGTGGTGGCTAAGATCAAGAGGGTTGTCATGGATCGAGATACCTATCCCCGGAAGTGGGGCTTGGGCCCCAGGGCGGCCATGAAGAAGAAGTTGATTGCTGAGGGCAAGCTGGATAAGCATGGGAAGCCCAATGACAAGACTCCGAAAGAGTGGCTGAGGAATGTTGTTGTGCCTGCTGGTGAGGATAGCACCATTGCCGGTATGGCTGCTGCTCCTGAAGTGGCTGCTGTGGAGGATAAGGAGAAGAAGGTTACGAACGAGGAAAATGGGGAAGGGAAGAAGCGGAAGAAACACGAAAGCGGAGATAGCCCTGCTTCTCATCCTGCTAAGAAGGTGAAAGTTGATGAGGTTGAGAAGGAAGAAAAGGTGAAGCTTAAGAAAGTAAAAGATGGGGATGTGGAGGTTGAGAAGAAAGAGAAGAAGAAGAAGAAGAAGAAGGACAAAGAAGAGAATGGCGAAGTGGCATCTTCAGATGAGGAGAGAACTGGAAAAGAGAAGAAAAAGAAGGACAAGGAAGGGGTCGAAGACGGTTCGCCAGATGTAGACAGGTCTGAGAAGAAGAAGAAGAAGAAGAAAGACAAAGAAGCCAAAGATAAAGGCGATGCTGCAATAAGTAGTGGAAAGGATGATAGTAATGCAGATAGGAGTGAAAAGAAGCATAAGAAAAAGAAGAACAAGGATGCTGAGGAAGAGTAG 1797 0.5359 MSQSESKKKKKQHKHKQQDDEGGEEGEQPQAQAPPGGAEREFLIKPQSYTPAIETSEWPILLKNYARLNVRTGHYTPLPSGYSPLKRPLPEYLKYGILNLDKPSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDPSKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGERDNMVTMHDVMDAQWVYDHYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEELVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRAAMKKKLIAEGKLDKHGKPNDKTPKEWLRNVVVPAGEDSTIAGMAAAPEVAAVEDKEKKVTNEENGEGKKRKKHESGDSPASHPAKKVKVDEVEKEEKVKLKKVKDGDVEVEKKEKKKKKKKDKEENGEVASSDEERTGKEKKKKDKEGVEDGSPDVDRSEKKKKKKKDKEAKDKGDAAISSGKDDSNADRSEKKHKKKKNKDAEEE* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0204 598 Pfam TruB family pseudouridylate synthase (N terminal domain) 116 232 IPR002501 GO:0006396
Dod03g0204 598 Pfam PUA domain 303 375 IPR002478 GO:0003723
Dod03g0204 598 TIGRFAM unchar_dom_2: uncharacterized domain 2 298 374 IPR004521 GO:0003723
Dod03g0204 598 MobiDBLite consensus disorder prediction 442 598 - -
Dod03g0204 598 SUPERFAMILY PUA domain-like 302 383 IPR015947 -
Dod03g0204 598 TIGRFAM CBF5: putative rRNA pseudouridine synthase 62 387 IPR004802 GO:0006396
Dod03g0204 598 Pfam tRNA pseudouridylate synthase B C-terminal domain 233 299 IPR032819 -
Dod03g0204 598 SUPERFAMILY Pseudouridine synthase 56 300 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod03g0204 598 SMART pua_5 303 377 IPR002478 GO:0003723
Dod03g0204 598 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 4 597 IPR004802 GO:0006396
Dod03g0204 598 SMART DKCLD_2 54 112 IPR012960 -
Dod03g0204 598 ProSiteProfiles PUA domain profile. 302 377 - -
Dod03g0204 598 Pfam DKCLD (NUC011) domain 55 112 IPR012960 -
Dod03g0204 598 CDD PseudoU_synth_hDyskerin 94 276 - -
Dod03g0204 598 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 4 597 - -
Dod03g0204 598 Gene3D Pseudouridine synthase 88 294 - -
Dod03g0204 598 MobiDBLite consensus disorder prediction 439 598 - -
Dod03g0204 598 Gene3D PUA domain 55 386 IPR036974 GO:0003723
Dod03g0204 598 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0204 Dod-Chr3 2132931 2134727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0204 4 480 NAC Transcription Factor Family AT3G57150 78.197 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0204 K11131 - gmx:100806355 794.653