Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0202 ATGGGGCTGCATCACAGAAAATTGATGCCAGAAATCTGCGAGTCGATCTGTCATGTGGAGCAGAATTGTTCATCGGATTGTAAAGTTTGCCTCAAGTTTTGCCTTACCAATCCTCAATATTACTATTACTCTCCACCACCATCACAGCCACCACCACCACAGGGTCCTTCTTGGTACTTAGATGATGAAGGACACCAAGGGAAAAACCACACGCTCTCGATCTATTTAGTCCTCGCTATTTCTCTTCTTGCGGCTGCTTTCTTTGCTGTTTGTTGCTGCGCCATTTGCACAAGGTTTTTCTCAAGGAGGAGGAGGGTGTCACTATCATCAAATCAGCAAACACAGGAAACCCGTGATGATTTTCTTGATGAAGAGCATGGCCCTGTGGTGGATCACCCCATTTGGTATATCCGCACCCCTGGTCTCCAAGAATCCATCATCAATGCCATCACAATTTGTCGGTATAAGAAAGGTGAAGGGTTGATTGAAGGAACGGAGTGCTCTGTTTGCCTGAGTGTGTTCATTGAAGATGAGAGCCTCAGGCTATTGCCAAAGTGTAACCATGCTTTTCATTTACCTTGCATTGATACATGGCTTAGATCACATACCAATTGCCCCATGTGCCGGGCTCCAATAGTTACCAACCCTGCAAGGATTCCATCTATGGAGCCTAATTTTCTTGATTCGAGTTCGATTTCAAGTTCAAGTTCAAGTTCCTTGGAACATACCCAGATGGAACTTGTGGAAAATAGTGGTGAAAGAATTGGAGGAATGGAAAATAGTGCTTCTGAGTTGAGGAATAGGGCAGAGGAACAAGGCCAATTGGAAGTTGAAGATGGGACAAGGGTGACTCAAAGTGGAAGTCTAGTAGCTGAGGTGGTAAGCATCAGACCAAGAAGATCTGTTTCACTGGATTCTTCTTCTGGTGCAAGTATCAATCTTGCTCTTGCATCTGTTGTGTCACTGGAATCTGATTTTGATTCAAATAGAGTGTTGGGGGATGTCAATGGACAAATTGCTTCAAAGAGGGTTACTGGGAATGAGAATTTGCCAACTACTTCCAAAGGAAGAAGCTCTTCTTTCAGGATAAGGTATCTGCATAGTGTTCCTAGTTCAATGAAGAGGTCACGTTCCTACAATGGCAAACACCTTCTATCATGGTATAGCCGCAGCCAGACTCAGAAGAAGCCAAATGCTCCACTGAGAAGCTTTTAA 1215 0.442 MGLHHRKLMPEICESICHVEQNCSSDCKVCLKFCLTNPQYYYYSPPPSQPPPPQGPSWYLDDEGHQGKNHTLSIYLVLAISLLAAAFFAVCCCAICTRFFSRRRRVSLSSNQQTQETRDDFLDEEHGPVVDHPIWYIRTPGLQESIINAITICRYKKGEGLIEGTECSVCLSVFIEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPARIPSMEPNFLDSSSISSSSSSSLEHTQMELVENSGERIGGMENSASELRNRAEEQGQLEVEDGTRVTQSGSLVAEVVSIRPRRSVSLDSSSGASINLALASVVSLESDFDSNRVLGDVNGQIASKRVTGNENLPTTSKGRSSSFRIRYLHSVPSSMKRSRSYNGKHLLSWYSRSQTQKKPNAPLRSF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0202 404 SUPERFAMILY RING/U-box 164 212 - -
Dod03g0202 404 CDD RING-H2_EL5_like 166 209 - -
Dod03g0202 404 Pfam Ring finger domain 166 209 IPR001841 -
Dod03g0202 404 SMART ring_2 167 208 IPR001841 -
Dod03g0202 404 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 393 - -
Dod03g0202 404 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Dod03g0202 404 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 393 IPR044675 -
Dod03g0202 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0202 Dod-Chr3 2097456 2099063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0202 5 216 C3H Transcription Factor Family AT1G72220 44.915 8.84e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0202 - - lja:Lj6g3v2193690.1 433.335