LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g0194	ATGAATCGCCATCACTCTATCGACCAAACCACTGTTAGTGATCGGCAACACAACAAAGTGGTCATGGAGATGGATGAGTGGAAGAAGCCAATGGCGAGTTATCTGCTCCGCTACCACTCCGACCAGCTCCGCTCCATCGCTTCCTCTCCCGATCCCAACCTTCACTACCCTCTCTTCATCGACTTTGCAGAATTGATGGAGGACGATCCTCGCCTTGCCCGTCTCGTCTTTGATCAACCCACTACCTATTTGCAAGTCTTCGATGATGCTGCTCTCTGGGCTCATAAAATCGTATTGGGTGATTTGGCGGAAGAGAAGAGTGCGGTTGAGAAGAATTTCATTCATGTTCGTGTCAACATCAGTGGCTCCCCCCTTGAATCCCCTGAGACATTTCCAAGCATAGGGCGTGTTCGAGTGCAGCATCGTGGGATTCTTCTCACCCTCAAAGGGACTGTAATCAGGTCTGGAGCAATCAAGATGCAAGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAGAAGAGCTTCACAGTTTATCCTGAGGTAGAAGCTCGAAACTCCATATCGTTACCTTCATTTTGCCCAATTCAGAATTCTAAGCCCTGTGGAGGCACAAAGTTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAAGAGATAAAAATCCAAGAAAGTACTCAGGTGCTAGGTGTTGGAGCCATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGACGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAATGGTCCCCAGAGTTAAAGGATGTGCGCTGCGACCTTGATCCTGTATTGATAGCCAACAATGTAAGGAGAACCAATCAGCTGAAATCAGAAATGGATATTTCTGATGTTGTAGTTATGAAATTCAAGCAGTTTTGGGTCCACTTCAAAGATGCACCTTTAAAAGGAAGGAATGCTATTCTACAAGGAATTTGCCCACAAGTATTTGGTCTTTTTACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACAAGCGTACGAGGGGAGTCCCATTTACTCTTGGTTGGCGATCCTGGCACTGGAAAGTCTCAGTTTCTGAAGTTTGCGGCAAAATTGAGCAATCGATCTGTTATTACCACTGGGTTGGGAAGCACGAGTGCCGGATTGACTGTTACTGCAGTGAAGGATGGAGGTGAATGGATGTTGGAAGCTGGGGCCCTTGTTCTAGCAGATGGAGGATTGTGTTGCATTGATGAATTTGATAGTATGAGGGAGCATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAAACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAAAACAACGGTATTTGGTGCCACAAATCCTAAAGGACATTATGATCCTCATCAACCCCTGTCTGTCAACACAACACTCTCTGGTCCTTTACTAAGCAGGTTTGATATTGTCCTTGTGCTCTTGGATACAAAGAATCCAGAATGGGATGCAGTAGTTTCATCTCATATTCTCTCTGAGGCAGAACCTGATGGAATCAACAATGATGAAGATCTCGCAAAACTCTGGCCTCTTTCTACTCTCAAGAGGTATATACACTATGTGAAAGAAACTTTCAGGCCAGTCCTTACAAGAGAGGCTGAAATAGTCATATCGAGCTATTATCAACTTCAAAGGAAATCTGCAACTCAAAATGCAGCTAGGACAACTGTCCGGATGCTGGAAAGTTTAATACGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACCCGATTAGATGCTATCACTGCTATTTTATGCGTAGAATCCTCCATGACTACCTCAGCTATAGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACCGAAAACCCTGATCAGGAATATGCCAAGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATACATGACTTTTCTGATATGAACAGAATGGAAGACTGA	2043	0.442	MNRHHSIDQTTVSDRQHNKVVMEMDEWKKPMASYLLRYHSDQLRSIASSPDPNLHYPLFIDFAELMEDDPRLARLVFDQPTTYLQVFDDAALWAHKIVLGDLAEEKSAVEKNFIHVRVNISGSPLESPETFPSIGRVRVQHRGILLTLKGTVIRSGAIKMQEGERKYMCHKCKKSFTVYPEVEARNSISLPSFCPIQNSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRTNQLKSEMDISDVVVMKFKQFWVHFKDAPLKGRNAILQGICPQVFGLFTVKLAVALTLIGGVQHVDASGTSVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPHQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDGINNDEDLAKLWPLSTLKRYIHYVKETFRPVLTREAEIVISSYYQLQRKSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDCIGNALHSNFTENPDQEYAKQERLILEKLGSIHDFSDMNRMED*	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g0194	680	PANTHER	DNA HELICASE MCM9	45	668	-	-
	Dod03g0194	680	Pfam	MCM P-loop domain	324	527	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	SMART	mcm	130	631	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	45	668	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	Gene3D	-	311	635	IPR027417	-
	Dod03g0194	680	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	332	639	IPR027417	-
	Dod03g0194	680	Pfam	MCM AAA-lid domain	548	629	IPR041562	-
	Dod03g0194	680	Gene3D	-	161	217	-	-
	Dod03g0194	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	421	435	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	363	378	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	449	462	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	499	507	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	ProSiteProfiles	MCM family domain profile.	322	525	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Dod03g0194	680	Gene3D	-	137	265	IPR012340	-
	Dod03g0194	680	SMART	AAA_5	364	513	IPR003593	-
	Dod03g0194	680	CDD	MCM9	325	629	-	-
	Dod03g0194	680	Pfam	MCM OB domain	137	265	IPR033762	-
	Dod03g0194	680	SUPERFAMILY	Nucleic acid-binding proteins	55	272	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g0194	Dod-Chr3	2046348	2057171	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g0194	31	654	Core DNA Replication Machinery Family	AT2G14050	77.193	0.0	1006

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g0194	K10738		-	gmx:100776255	1136.32