Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0190 ATGGAAAATGACGACGTTGACATGCACGCAGCTGACAACACCGAAGCAGTAATGGAACTGGATGACATGAAGAAGCGGTTGAAGGAGATGGAAGATGAAGCTGCTGCTCTGCGAGAGATGCAGGCCAAAGTCGAGAAAGAGATGGGATCTGTCCAAGATCCTGCAACTGCTTCTGCTAGTCAGGCGAATAGAGAAGAAGTAGATTCTCGGTCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAGGAAGTGCAGCAGCATTTTCAATCATGTGGAACAGTAAACAGAGTCACCATTCGGACTGACAAGTTTGGCCAACCCAAGGGTTATGCCTATGTAGAGTTCCTTGAAGCAGAGGCTATTCAAGAGGCCCTTTTGCTAAATGAATCTGAACTGCATGGGCGTCAATTGAAGGTCACGGCTAAGAGGACCAACATACCAGGAATGAAGCAATACCGTCCTCGTCGGTCCAATCCATACATGGGATTTCGAGGCAGAACTCCATATGCACCTCCTTTCGCCTATCCTCCTTATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTATAGCCCCTACTATTGA 597 0.4757 MENDDVDMHAADNTEAVMELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEAEAIQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGFRGRTPYAPPFAYPPYGYGKVPRFRMAMRYSPYY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0190 198 Gene3D - 7 143 IPR012677 -
Dod03g0190 198 CDD RRM_II_PABPs 71 142 - -
Dod03g0190 198 SMART rrm1_1 71 142 IPR000504 GO:0003723
Dod03g0190 198 Coils Coil 13 47 - -
Dod03g0190 198 MobiDBLite consensus disorder prediction 53 67 - -
Dod03g0190 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Dod03g0190 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 195 - -
Dod03g0190 198 SUPERFAMILY RNA-binding domain, RBD 58 168 IPR035979 GO:0003676
Dod03g0190 198 MobiDBLite consensus disorder prediction 44 67 - -
Dod03g0190 198 PANTHER - 4 195 - -
Dod03g0190 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0190 Dod-Chr3 2022281 2025127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0190 71 141 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 3.14e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0190 K14396 - gmx:100791351 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0190 03 2022281 2025127 Dod03g0190 03 2022281 2025127 ECH
Dod04g1674 04 39195988 39202596 Dod03g0190 03 2022281 2025127 PCT