Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0173 ATGTCTCACTTCGGTAGGTCGGGTCCCCCAGACATCAGCGACACGTACTCGCTGCTGGTGCTGAACATCACCTTCCGTACCACCGCCGACGACCTTTTCCCTCTCTTCGACAAGTACGGCAAGGTCGTCGACATCTTCATCCCCAAGGACCGCCGCACCGGCGACTCCCGCGGCTTCGCCTTCGTCCGCTACAAGTACGCCGACGAGGCCCAGAAGGCCGTCGAACGCCTCGACGGCCGCCTCATCGACGGCCGTGAAATCACCGTCCAGTTCGCCAAGTACGGCCCCAACGCCGAACGCATCCACAAAGGTAGGATCGTCGAGTCCCTCCCCAGATCTAGGCACAGCCGCAGTCCCAAGCGAAGGCATCGTGATGATGATTACAGGGAAAGGGATCACCATAGGAGGAGGAGTCGCAGCAGGAGTTATGATAGGTATGAGCGTGACAAGTACCGCGGCAAGGACAGGGATTATCGTCGCCGCAGCCGGAGTGCCAGTCCGAATAACAAGGGCCGTGGAAGGGGCCGCTATGATGATGAAAACCCTAGCCGGAGCCGGAGCCGGAGCCGATCATTAGATAGCCGCTCCCCTGCTCGAGGCAGTCCAAGTCCTGGGAGGAGTCTTACCCCACAGAAAAGTGCTTCTCCAAGGAAGAAGAGTTCAAGGGATGAAAGCCCCCGTAATGGACACTCACCTACACCTCGCAGTGTCTCCCCACGCGGTCGCCCTGATGCTTCCCGTAGCTTGTCCCCGCGGAATTCTGATGGTGATGTATGA 777 0.5933 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGDSRGFAFVRYKYADEAQKAVERLDGRLIDGREITVQFAKYGPNAERIHKGRIVESLPRSRHSRSPKRRHRDDDYRERDHHRRRSRSRSYDRYERDKYRGKDRDYRRRSRSASPNNKGRGRGRYDDENPSRSRSRSRSLDSRSPARGSPSPGRSLTPQKSASPRKKSSRDESPRNGHSPTPRSVSPRGRPDASRSLSPRNSDGDV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0173 258 MobiDBLite consensus disorder prediction 142 164 - -
Dod03g0173 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 257 - -
Dod03g0173 258 MobiDBLite consensus disorder prediction 172 193 - -
Dod03g0173 258 MobiDBLite consensus disorder prediction 194 215 - -
Dod03g0173 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Dod03g0173 258 SMART rrm2_1 17 90 IPR003954 GO:0003676
Dod03g0173 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Dod03g0173 258 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Dod03g0173 258 MobiDBLite consensus disorder prediction 102 258 - -
Dod03g0173 258 MobiDBLite consensus disorder prediction 102 133 - -
Dod03g0173 258 Gene3D - 4 103 IPR012677 -
Dod03g0173 258 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 257 - -
Dod03g0173 258 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0173 Dod-Chr3 1868973 1872562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0173 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 1.48e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0173 K12891 - gmx:100778928 328.946