Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0063 ATGCCGCCGAGGGTGTTAAGTGCCATGGTAAAATCCCAAAGGTCAATTGGTTGCAACATGACAGTGCACTATCAGAACTTCTCCTGCCAACCCAAGTTCTTGAGCTCCAATTTCCTGTTCTCTCTGCCGACACAGAAGCCTCACAACGGAGAACCAACTGATGGGAGGTTTGTAGACCTAGAAAACCAAAATCTTCAAAGTTCACAAAGAGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTACAGAATTCTAGCAGGAGCTATGCCCAACCTGGAAAGACTGTTAAGGTTACTCCCCAGCTTTATGAAGACAGGAGAATAAATTCCTCGCAAGGAACCTATGAGAATGACAAGCTTAGGCATCCTGATGTCATCACAACTCCAACTGTTATTAATCATAATTCAGGCATTTACGATTGTTCACTGAACAATAATGCAGGCCAAAACAATGAGTCTACAAAATGCATGGTCAATGACATTGATGAAGATGATGACATACTTGAGAACATTGATGTTGACCAAATAGTGGAGAAGTACCAGTCAAGTTGCACACCCCAACCATCAATATCCAGACTTCCTCCAATTACACCAACTGCAGATACAAATAATTTTGCTAGACAAGGGGATAATATTTTGCCACCAGAGCTATGTATAGATTGCAACCATGGTTACAAGATAACAAGGCTTCGCCAAGATAGGTCACAGCTGAATATGCAAATTCAGCATCTTGAAAAATATATTCATTCCCGTAATTTTGATGAGGAAAGGCTAAAGTCACCTTTTTTGGCATCCATGGCTCCTCCTACATCTTTTGTGTATGAAACGCCTCGGCAAACTGTCCAGAGTAATGGACCAAACCGATATGAAGCCCAGGATTATGTGGGTAATGGAACATGTGGGTCACTGTTCCAGTCTCTTTCATTCTCATCAGGTCCAGTGGAGAGGGAAGCATTTGTTCCAAAGATTATTGATGTAAACTACATTGAAGGTTCTGGAGACAAATGCTGGAGCAGCAAGGATTTTCCTTGGACAAAATCATTAGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTAACCTATCAGCTGCCAGCTCTTATCTGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTACTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCTAGTATGGAATGGACTGAACAACAGGAGATACTTAGAGAACTTAATTCTGATTATTGTAAATACAAGTTGTTATATGTAACACCTGAAAAGGTTGCCAAAAGTGATGTGCTTATTCGACACTTGGAGAGTTTACATGTTCGAGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCTACAGCTAGTGTAAAAGAGGATGTGGTGCAAGCTCTAGGTCTCATTAACTGCATCCTTTTTCGGCAGAGTTTTAATCGCCCAAACTTATGGTATTCTGTCGTTCCAAAGACCAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCTCGAATGGACTGTGAAAAGGTTGCTGAAAAGTTACAGGAATGTGGACACAAGACTGCATTTTATCATGGCAACATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATTATTTGTGCCACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCACTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGGGCTGGTAGAGATGGTCTCCGTTCCTCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGTCAAGGAGCAGTGGAGCAAAGTCCCATGACATCTGGCTACAATCGTTCAAATATGACAAATTCAGGAAGAGTACTGGAAACAAACACTGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTAGGCGCCTTCTTCAGCTTGCTCATTTGGGGGAGAAGTTTGATTCTTCAACATGTCAGAAAACATGTGATAATTGTTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACTGAGATTGCAAAGCAATTGGTTGAATTGGTTAAGCTAACGGGGCAGAAGGTCTCATCATATCATATATTAGAAGTGTATCGCGGTTCCTTAAGCCAGTTGGTAAAGAAATATCGGCATGAGACTGTGAGACTTCATGGTGCTGGGAAGCACCTAGCTAAGGGGGAGGCTTCCCGGGTATTGCATCATCTTGTTGTAGAGAATTTTCTTCTGGAGGAGGTTAAGAAAAGTGATATTTATGGATCAGTATCATCCATATTGAAGGTAAATGAGCCCAAGGTCTGCAATCTCTTGCTTGGTGGGCAGAGAATCACATTGAGGTTCCCATCCTCTGTGAAAGCATCAAAGCGAGGGAAGTCTGATGCAACTCCAGCTAGAGGTTCTCTGACATCTGGAAAGCTAAATCTTCCTCAAGATGACATTCCTGCTCAGCCTCAAGCCGAAGTTGATGTGAATCTCTCGGCTAAGTTATACACAGCTCTGCGGATGCTGCGGACAGCTCTTGTTAGGGAAGCTGGAGATGGTGTCATGGCTTACCACATATTTGGTAATGCTACGCTGCAGCAGATAAGCAAGAGAGTACCGAGAACAAAGGAAGAACTCCTCGATATTAACGGCATTAGCAAGGCTAAGGTAAACAAGTATGGGGATCGGTTACTGGAAACCATTGAAAATACTATAAACGAGTATTACAAGTTGGATAAAAACAGCAGCGGCAGTAAAGGCAGTGCTGATTCTGCCAAAAGGAGACGAGAAGCAAATGGAGACCCTCCAGATGGTAATGCTGAGGATGATGATGACTTCACCAAGAGTACTGGCCGTTCCAAGAAAAGGACAGTAAAGAGACAGAACAAAAAAGCTGTGATATATGATTCTGCAGAGGAAGATAACGACTATGTATACCTTGATGACGAACTAGACCTAGATTTTGACAATATAGAAAATGAAGCATTAAGTAAAATAAATTGTAGGAATGCTGAAGGAAGAGTATTGCCTCAATGGCAATCTTAA 3348 0.4128 MPPRVLSAMVKSQRSIGCNMTVHYQNFSCQPKFLSSNFLFSLPTQKPHNGEPTDGRFVDLENQNLQSSQRAQVEKAWLALSSLQNSSRSYAQPGKTVKVTPQLYEDRRINSSQGTYENDKLRHPDVITTPTVINHNSGIYDCSLNNNAGQNNESTKCMVNDIDEDDDILENIDVDQIVEKYQSSCTPQPSISRLPPITPTADTNNFARQGDNILPPELCIDCNHGYKITRLRQDRSQLNMQIQHLEKYIHSRNFDEERLKSPFLASMAPPTSFVYETPRQTVQSNGPNRYEAQDYVGNGTCGSLFQSLSFSSGPVEREAFVPKIIDVNYIEGSGDKCWSSKDFPWTKSLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSASMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLIRHLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLINCILFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKTAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMLSQGAVEQSPMTSGYNRSNMTNSGRVLETNTENLLRMVSYCENDVDCRRLLQLAHLGEKFDSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQKVSSYHILEVYRGSLSQLVKKYRHETVRLHGAGKHLAKGEASRVLHHLVVENFLLEEVKKSDIYGSVSSILKVNEPKVCNLLLGGQRITLRFPSSVKASKRGKSDATPARGSLTSGKLNLPQDDIPAQPQAEVDVNLSAKLYTALRMLRTALVREAGDGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKAKVNKYGDRLLETIENTINEYYKLDKNSSGSKGSADSAKRRREANGDPPDGNAEDDDDFTKSTGRSKKRTVKRQNKKAVIYDSAEEDNDYVYLDDELDLDFDNIENEALSKINCRNAEGRVLPQWQS* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0063 1115 SMART helicmild6 595 676 IPR001650 -
Dod03g0063 1115 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 370 545 IPR014001 -
Dod03g0063 1115 Pfam Helicase conserved C-terminal domain 569 675 IPR001650 -
Dod03g0063 1115 SUPERFAMILY HRDC-like 933 1006 IPR010997 GO:0000166|GO:0044237
Dod03g0063 1115 MobiDBLite consensus disorder prediction 1013 1068 - -
Dod03g0063 1115 Gene3D - 776 886 IPR036388 -
Dod03g0063 1115 SMART hrdc7 930 1012 IPR002121 GO:0003676
Dod03g0063 1115 Coils Coil 228 248 - -
Dod03g0063 1115 Gene3D HRDC domain 926 1013 IPR044876 -
Dod03g0063 1115 Gene3D - 327 552 IPR027417 -
Dod03g0063 1115 CDD SF2_C_RecQ 553 685 - -
Dod03g0063 1115 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 127 224 - -
Dod03g0063 1115 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 354 829 IPR004589 GO:0004386|GO:0006310
Dod03g0063 1115 Pfam DEAD/DEAH box helicase 364 532 IPR011545 GO:0003676|GO:0005524
Dod03g0063 1115 SMART ultradead3 358 561 IPR014001 -
Dod03g0063 1115 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 484 493 IPR002464 -
Dod03g0063 1115 ProSiteProfiles HRDC domain profile. 930 1012 IPR002121 GO:0003676
Dod03g0063 1115 PANTHER DNA HELICASE RECQ FAMILY MEMBER 127 224 - -
Dod03g0063 1115 PANTHER DNA HELICASE RECQ FAMILY MEMBER 227 1083 - -
Dod03g0063 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 819 IPR027417 -
Dod03g0063 1115 Gene3D - 553 772 IPR027417 -
Dod03g0063 1115 Pfam RecQ zinc-binding 687 769 IPR032284 -
Dod03g0063 1115 SMART RQC_2 778 889 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dod03g0063 1115 Pfam RQC domain 775 891 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dod03g0063 1115 MobiDBLite consensus disorder prediction 894 917 - -
Dod03g0063 1115 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 227 1083 - -
Dod03g0063 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 694 IPR027417 -
Dod03g0063 1115 MobiDBLite consensus disorder prediction 1023 1053 - -
Dod03g0063 1115 Pfam HRDC domain 934 1002 IPR002121 GO:0003676
Dod03g0063 1115 CDD DEXHc_RecQ 353 552 - -
Dod03g0063 1115 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 731 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0063 Dod-Chr3 822757 830107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0063 584 707 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 2.01e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0063 K10901 - gmx:100817867 1641.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0063 03 822757 830107 Dod03g0063 03 822757 830107 ECH