Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0056 ATGGAACGTAAGAGAAGCTGGAGCAAGTGTGCAAGAGAAAGAAGTCATCTAATTGATGTCCTTTCTTGCATTTTAGTTTGGGAGAAATCTAGTAACGGTGACATCCCCACTAAGCATCCACGCAAGGCCTCCGAGGAGAATGCAGCAGAACCAGTTTTCTTACATGGTGACTTGGATATCTGGATTTTGGAAGCCAAATCTCTCCCCAATTTGGATCTTTCCTCCGAAGCAGTGCGCAAATGTTTCACCATGGGCAACCGCTGCTCCCCTCCCTTTGTCAAGGGCCTCAAGACACACTCAGGGAAACACAAGATGATAACCAGTGACCCTTATGCCTCTGTTTGCCTTGCAGGGGCCACCGTAGCTCAAACCAGAGTCATTCCAAACTGCGAGAACCCTTTGTGGGACGAGCATTTTATTGTCCCCGTTGCTCATCCTGCTCAGAAAGTGGAGTTCCTTGTCAAAGATGATGATGTTCTTGGTGCTGAGCTTATTGGAGTTGTGGAGATATCTGTCAACAAGATTCTGCCAGGGAATGAAATCAACGATTGGTTTCCAATCATTGGCCATTACTCAAGCTGCTTGAAGCCTTATCCCGAGTTGCATCTGTCCATTCAGTTTAGGCCAGTTGGGGTGAACGTGAACCCTTCGGCAGGGGATGTAGGTAATGGTAATGGGGCAGAGAGAGATTATGTGGGAGTTCCTAATACGTATTTTCCTCTCAGAAAAGGAGGGTCTGTGACCCTTTATCAAGATGCACATGTACCGGATAATAAGCTACCTGAGATTCCTCTTGAGGGTGGTAAAGTGTTTCGCCATGGTAAGTGTTGGGAGGAGATGTGCCATGCGATTTTGGAAGCTCACCATTTGATATATATTATAGGGTGGTCCATTTATCATCCGGTTAAGCTTATCAGGGAGCCATCAAAGCCCTTGCCTTCTGGTGGACAGCTTTCACTTGGAGAGTTGTTGAAATACAAGTCACAAGAAGGGGTCCGCGTGGTTATGTTGATTTGGGATGATAAGACTTCGCATGACAACTTCTTTTTGAAAACGGATGGTGTCATGCAGACTCACGATGAACAAACTAAAAAGTATTTCAAACACTCCACTGTGCATTGTGTGCTAGCTCCGCGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGTACCCTTTTCACGCACCATCAGAAGTGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATCGAAAAATAACTGCTTTTGTTGGTGGCTTGGATCTCTGTGACGGCAGATATGATACTCCTGAGCATCGGCTTTTTGCTGATCTAGATACTGTCTTTCAAAATGATTTTCATAATCCCACATTCCCGTCGTCATATTCGCGTGGGCCAATTCCAAGGCAGCCATGGCATGACATGCATTGCAAAGTCGAGGGTCCAGCTGCATATGATATATTGACCAATTTTGAACAAAGATGGAGGAAGGCCAGAAAATGGCGCGACTTTCGGCTCAAAAGGGTGACAAGTTGGAATGATGATGCTTTACTAAGCCTAGACCGTATGTCATGGATTCTCACTCCATCTCCCGGTCCTGATGGTCAGAAAGTTGTTCATGTAACTGAAGAAGACGACCCTGAGAGTTGGCATGTGCAGGTATTTCGGTCCATAGATTCAGGATCCGTGAAGGGCTTTCCAAAGAATGTTGATGAAGCAAAGTCTCAGAACCTTTTCTGTGGAAAAAATTTGAAAGTAGATAAAAGCATCCATATGGCTTATGTAAGAGCAATAAGATCAGCTCAACACTTCATCTATATTGAGAGTCAGTATTTTCTGGGATCCTCATATAACTGGCATTCATACAAAGGTGCAGGTGCAAACCATTTAGTTCCCATGGAATTGGCTTTAAAAATTGCCAACAAGATCAGTGCAAATGAACGTTTTACTGTGTATATAGTTATACCAATGTGGCCAGAGGGGGTTCCCAACAGTAATGCTGTTCAAGAAATTCTGTACTGGCAGGGACAAACAATGTCTATGATGTACAGGCTTGTTGCTGACGCCCTTAAAAAGGAAGGTCTTTCCGATCAGTATCATCCGCAAGATTATCTCAATTTTTACTGTCTTGGAAAGCGTGAACCTCAATCTTCAGAATGTCCATCACCAATTCAGCAATCTGAAAATCGTGGTTTGGCATCAGTCCAAAAATACAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGACGAATACGTTCTCATGGGCTCTGCAAATATTAACCAGAGATCCTTGGATGGTTCAAGGGACACAGAAATAGCTATGGGCGCTTATCAGCCAAAGTACGCATGGAAAGAAAAGAATTCTCATCCACGTGGCCAGGTGTATGGTTACCGCATGTCACTGTGGGCTGAGCACCTTGATGGCGTTGAGGAAACTTTTGCAGAACCAAACAGCCTGGAATGTGTTAGATATGTGAACAACATAGCCAAACAAAACTGGGATGCATACGTGTCTGAGGAAGGGAGGCAGAAGATGAGGGGACATTTGATGCAGTATCCCTATTCAGGTCAGCCGTGA 2583 0.4437 MERKRSWSKCARERSHLIDVLSCILVWEKSSNGDIPTKHPRKASEENAAEPVFLHGDLDIWILEAKSLPNLDLSSEAVRKCFTMGNRCSPPFVKGLKTHSGKHKMITSDPYASVCLAGATVAQTRVIPNCENPLWDEHFIVPVAHPAQKVEFLVKDDDVLGAELIGVVEISVNKILPGNEINDWFPIIGHYSSCLKPYPELHLSIQFRPVGVNVNPSAGDVGNGNGAERDYVGVPNTYFPLRKGGSVTLYQDAHVPDNKLPEIPLEGGKVFRHGKCWEEMCHAILEAHHLIYIIGWSIYHPVKLIREPSKPLPSGGQLSLGELLKYKSQEGVRVVMLIWDDKTSHDNFFLKTDGVMQTHDEQTKKYFKHSTVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFVGGLDLCDGRYDTPEHRLFADLDTVFQNDFHNPTFPSSYSRGPIPRQPWHDMHCKVEGPAAYDILTNFEQRWRKARKWRDFRLKRVTSWNDDALLSLDRMSWILTPSPGPDGQKVVHVTEEDDPESWHVQVFRSIDSGSVKGFPKNVDEAKSQNLFCGKNLKVDKSIHMAYVRAIRSAQHFIYIESQYFLGSSYNWHSYKGAGANHLVPMELALKIANKISANERFTVYIVIPMWPEGVPNSNAVQEILYWQGQTMSMMYRLVADALKKEGLSDQYHPQDYLNFYCLGKREPQSSECPSPIQQSENRGLASVQKYRRFMIYVHAKGMIVDDEYVLMGSANINQRSLDGSRDTEIAMGAYQPKYAWKEKNSHPRGQVYGYRMSLWAEHLDGVEETFAEPNSLECVRYVNNIAKQNWDAYVSEEGRQKMRGHLMQYPYSGQP* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0056 860 Gene3D Endonuclease Chain A 532 791 - -
Dod03g0056 860 Pfam Phospholipase D Active site motif 396 430 IPR001736 GO:0003824
Dod03g0056 860 PANTHER PHOSPHOLIPASE D 50 856 IPR015679 -
Dod03g0056 860 CDD C2_plant_PLD 51 208 - -
Dod03g0056 860 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 210 IPR035892 -
Dod03g0056 860 SMART C2_3c 57 184 IPR000008 -
Dod03g0056 860 SUPERFAMILY Phospholipase D/nuclease 235 502 - -
Dod03g0056 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 738 765 IPR001736 GO:0003824
Dod03g0056 860 Pfam C2 domain 56 187 IPR000008 -
Dod03g0056 860 SUPERFAMILY Phospholipase D/nuclease 587 820 - -
Dod03g0056 860 Gene3D C2 domain 55 215 IPR035892 -
Dod03g0056 860 Pfam Phospholipase D C terminal 812 856 IPR024632 -
Dod03g0056 860 PIRSF PLD_plant 42 859 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dod03g0056 860 SMART pld_4 395 430 IPR001736 GO:0003824
Dod03g0056 860 SMART pld_4 738 765 IPR001736 GO:0003824
Dod03g0056 860 Pfam PLD-like domain 593 774 IPR025202 -
Dod03g0056 860 ProSiteProfiles C2 domain profile. 36 185 IPR000008 -
Dod03g0056 860 PANTHER PHOSPHOLIPASE D 50 856 - -
Dod03g0056 860 Gene3D Endonuclease Chain A 269 514 - -
Dod03g0056 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 395 430 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0056 Dod-Chr3 756127 763630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0056 52 855 Phospholipase D Gene Family (Wang group) AT2G42010 53.670 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0056 K01115 - gmx:100779740 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0056 03 756127 763630 Dod03g0056 03 756127 763630 ECH