Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0050 ATGGCCGGTATGAATGCAGAAGCAGCAGCTTTTGAGCAAGAGGTGGTGTACAAGGAGTGCAGGCGCAACCATGCAGCCTCCCTTGGCAAAGTCTCTTGCGACGGATGCTGCGAGTTCCTAGGCGGCGGGGGCGAGAACAACGCCAGGGATGACATGTTGTGTGCTGCATGCAACTGCCACCGCAACTTTCACCACCAATACACCATTTATATTCCTGTTGCCCAAAGCAGCCAATTGCAAGGTGAGAATAACAACATTCTAAACAAAACTGCAGGTGCTACTAGCTCGCTTGCAGGGCCTCACGTGCAGCCCATAGCCATGGTGGTGAATGGCGGCGGAAACAACCCGGGTGCCAACGCTCGAGACGGCGCCGAGGAGGAGGAGGAGGAATAG 393 0.5547 MAGMNAEAAAFEQEVVYKECRRNHAASLGKVSCDGCCEFLGGGGENNARDDMLCAACNCHRNFHHQYTIYIPVAQSSQLQGENNNILNKTAGATSSLAGPHVQPIAMVVNGGGNNPGANARDGAEEEEEE* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0050 130 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 72 - -
Dod03g0050 130 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 12 72 - -
Dod03g0050 130 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 17 66 IPR006456 -
Dod03g0050 130 Pfam ZF-HD protein dimerisation region 15 66 IPR006456 -
Dod03g0050 130 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 17 67 IPR006456 -
Dod03g0050 130 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0050 Dod-Chr3 647675 648067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0050 17 113 ZF-HD Transcription Factor Family AT2G18350 38.144 1.13e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod03g0050 ZF-HD_dimer 3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0050 - - lja:Lj4g3v2313490.1 96.6709