Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0013 ATGGGTTGTATATGCTCCAAAGGAAAATCTGCAAATGAGTATGTTGTGGAGAATCACGCCAAAAAAGACAAGGAAACCAAGGCAAACAGATCCTCCAAGCCCAAGCACACCTTGAGCCTGAGCCTGAGCCTGAGTGTGAAGCGAGATAGAGTTGTGATAGAGAACGATGGTAGTGGGAATGATGCCACAGCACGCTTGATACCTAATTCCACAACCTTCCATTGCCACTCTCACTCACACTCTCGGGGTGGAACTGGAACTAGAATTGAAGGATCCTCATCCACTACCATTTCTTCAAATGAAGGGGAGAAGGACAAGAGTACAAAGGCAGTAGTGCTTCAGGTGGGGCAGCCTAGGGTGTGTAGGATGTATAGCGTGACAAGAGGGGAAAGAAGGACTCAGGTTCTTGCTGGATGGCCCTCGTGGCTCACTGCCGTTGCAGGGGAGGCCATTAGTGGTTGGATACCTCGCAGAGCTGACTCTTTTGAGAAGTTGGATAAGATTGGACAACGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTAGAAACAAATAAAATTGTTGCACTGAAAAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTCCGCTTTATGGCAAGAGAAATTATTGTGCTGAGAAGGTTTGATCATCCAAATGTTATGACGCTTGAAGGCATAATTACTTCAAGGGTTTCTGGCAGCCTTTACCTTATTTTTGAATATATGGAGCATGATCTTGTAGGGCTTGCTATAATACCCGGTATCAAATTTTCTGAAGCACAGATCAAATGCTATATACAACAACTGCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAAGGCTCAAATATTTTTCTTGACAACAATGGCAATCCAAAGATTGGTGATTTTGGGCTGGCAACTCTGTTTCAGCCATCTCAAGGGTAG 951 0.4448 MGCICSKGKSANEYVVENHAKKDKETKANRSSKPKHTLSLSLSLSVKRDRVVIENDGSGNDATARLIPNSTTFHCHSHSHSRGGTGTRIEGSSSTTISSNEGEKDKSTKAVVLQVGQPRVCRMYSVTRGERRTQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKIGQRTYSSVYKARDLETNKIVALKKVRFANMDPESVRFMAREIIVLRRFDHPNVMTLEGIITSRVSGSLYLIFEYMEHDLVGLAIIPGIKFSEAQIKCYIQQLLRGLEHCHSRGVMHRDIKGSNIFLDNNGNPKIGDFGLATLFQPSQG* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0013 316 PANTHER KINASE CDK9, PUTATIVE-RELATED 108 315 - -
Dod03g0013 316 Gene3D Transferase(Phosphotransferase) domain 1 250 316 - -
Dod03g0013 316 PANTHER CELL DIVISION PROTEIN KINASE 108 315 - -
Dod03g0013 316 SMART serkin_6 162 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0013 316 MobiDBLite consensus disorder prediction 20 39 - -
Dod03g0013 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Dod03g0013 316 MobiDBLite consensus disorder prediction 73 101 - -
Dod03g0013 316 Gene3D Phosphorylase Kinase; domain 1 157 249 - -
Dod03g0013 316 SUPERFAMILY Protein kinase-like (PK-like) 155 313 IPR011009 -
Dod03g0013 316 MobiDBLite consensus disorder prediction 73 109 - -
Dod03g0013 316 ProSiteProfiles Protein kinase domain profile. 162 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0013 316 Pfam Protein kinase domain 162 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0013 Dod-Chr3 237579 239836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0013 154 308 Core Cell Cycle Gene Families AT5G10270 48.235 2.23e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dod03g0013 Pkinase 4.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0013 - - gmx:100805055 399.053