Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0009 ATGGGAAGGAAGAAGGCAGAGGATGCAGGCCCATCTGCAAAGACTAAGACAAGTGGCAAAGATGCTCCTAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTTGCCAGTATGGATGCAAAGCCTGATAAACCCAAAAAAGCCTCTTCTTCTTCTAGTAAGCCCAAGGCAAAATCTGCTCCCAAAGCTTCTGCATACATTGATGGCATTGATCTTCCCCCCTCAGATGATGAAGACAACGAAGATATCTTGGAAGAGGAGCAAGAGCAAAATAATGCATCCAAAAAGTCCAGTCAGCAGCAAAGGCCTGATTTGAAGCCATTTGAAGTATCCATTGCAGAAAAAGAGTTGAAAAAACGTGAAAAGAAGGATCTTTTAGCAGCCCATGCTGCTGAGCTGGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACCGTGGTCATTGGAAGCCGAACTTCAGTGCTTGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCAGTGAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGGAAGGGCAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTTTGGTTGAACAGGAGATAGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCAAATGAAGAACTAGTTAAAATTCGACAAGAAGTAGCTTCTCTACAAAATGCAACTTCTATTGAAGAAAGTGTGGACAAAGATAATAATTATGAGGAAGACGATGCAGGAGAGAAGCTAGCAGAGCTGTATGAAAAACTACAGCTAATGGGTTCTGATGCTGCTGAAGCTCAAGCATCAAAGATTTTAGCCGGTTTGGGTTTTACAAAGGATATGCAGGGTCGACCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGGATTTCCTTAGCTCGAGCCCTTTTTGTGCAGCCAACTCTATTATTGCTGGATGAACCCACAAATCATCTCGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAGAAGACTTTGGTGGTTGTCTCACATGATAGGGATTTCCTCAATACGGTTTGCACAGAGATTATTCATCTGCATAATTTAAAGCTCCATTTCTATCGTGGAAATTTTGATGACTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCTGCTAAAAGGAGTGGAAACCGAGCTCAGCAAGAAAAGGTGAAGGATCGAGCAAAGTTTGCAGCAGCCAAGGAAGCATCTAAAAGCAAGGGCAAAGGCAAGGTTGATGAGGATGAGGCCCCACCAGAGGTCCCACAGAAGTGGAGGGATTACAGCGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGGGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTACTGAACCTTCTGGCTGGTGACTTGGTCCCAACTCAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACCGCTGTTCAGTATCTTCTTCGGCTACCACCCAGATCAGGAGGGACTTAG 1800 0.44 MGRKKAEDAGPSAKTKTSGKDAPKKEKISVSAMLASMDAKPDKPKKASSSSSKPKAKSAPKASAYIDGIDLPPSDDEDNEDILEEEQEQNNASKKSSQQQRPDLKPFEVSIAEKELKKREKKDLLAAHAAELAKKEALKDDHDAFTVVIGSRTSVLDGEDDADANVKDITIENFSVSARGKELLKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKTALEAVVSANEELVKIRQEVASLQNATSIEESVDKDNNYEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHNLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTQGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLPPRSGGT* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0009 599 Coils Coil 419 439 - -
Dod03g0009 599 Gene3D - 166 452 IPR027417 -
Dod03g0009 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 582 IPR027417 -
Dod03g0009 599 Pfam ABC transporter 519 563 IPR003439 GO:0005524
Dod03g0009 599 Gene3D - 486 589 IPR027417 -
Dod03g0009 599 SMART AAA_5 193 399 IPR003593 -
Dod03g0009 599 MobiDBLite consensus disorder prediction 1 107 - -
Dod03g0009 599 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 598 - -
Dod03g0009 599 Pfam ABC transporter 184 355 IPR003439 GO:0005524
Dod03g0009 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 426 IPR027417 -
Dod03g0009 599 PANTHER - 5 598 - -
Dod03g0009 599 CDD ABCF_EF-3 169 400 - -
Dod03g0009 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 169 423 IPR003439 GO:0005524
Dod03g0009 599 ProSitePatterns ABC transporters family signature. 327 341 IPR017871 GO:0005524
Dod03g0009 599 Coils Coil 245 265 - -
Dod03g0009 599 MobiDBLite consensus disorder prediction 71 86 - -
Dod03g0009 599 MobiDBLite consensus disorder prediction 436 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0009 Dod-Chr3 206769 208976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0009 182 402 Calmodulin-binding Proteins AT2G36910 27.542 2.85e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0009 K06184 - gmx:100806226 937.947