Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0001 ATGGCTTCAAATCAGATTCAGACATCTGCTACAAACCAAGCAGGGGCAACCAATGATGCTTTATACAAGGAACTATGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAAAGGGTTTACTACTTTCTACAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAAGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCATCTAAAATATTATGTAAAGTGGTCAATGTTCATCGTCAGGCTGAACCTGAAACTGATGAAGTATATGCACAGATAACGTTGTTTCCTGAAGCAGATCAAGGTGAAGTGGTAAGCCCTAATGATCCTCTGCCTGAGCCACCGAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGCACTCATGGGGGTTTCTCTGTTCTTCGAAGGCATGCTGATGATTGTCTGCCTCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAGTTGGTTGCAACTGACTTGCATGGGAATGAATGGCATTTTCGACATATTTTTCGAGGGCAACCAAGGCGCCACCTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTGGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTAAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCAGTTATATCTAGCCACAGTATGCATCTCGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACGCTGTTTTCTGTATTTTACAAGCCCAGAACAAGTAGGTCAGAGTTTATTGTGAGTGTCAACAAATATCTCGAAGCTCGAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGGAGGTTCAGTGGGACAATTGTGGGTGTTGGCGATAATAAATCACCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACTGCTCCTGCAAACTCCCAGCCAACCCAAAGAAACAAGAGATCACGGCCTCCCATTCTGCCTTCAACAATGCCTGATTCTTCTCTTCAAGGTGTATGGAAATCTCCGGTAGAATCCCCATCTTTCACCTATCGTGATCCTCAACATGGCCGAGATCTCTATGCATCACCCAAATTCAATTCTACTGCATCTAACTTTCTAGGTTTTGGTGGGAATAACTCTGCTTCCAACAAGTCAATATATTGGTCTAATAGGATGGAAAACACTACAGAATCATTTTCACCTGTAGCACTTAAAGAATCTGCAGAAAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGACAATTCTAATGCAGAAGAAAGTCTGCCAACTGTCACTTTGTCAGGAAGGGTTGGTGATGATAGGTCCGTTCCATCTTTGGATGGCGACTCTGATCAGCATTCCGAACCATCAAATGTTAATCGATCAGATATTCCTTCTGCAAGCTGTGACGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGGGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCTTGAGTTCTGTAGCGTTGTGAGGAAAATTTTCATCTACACAGTAGAGGAGGTGAAGAAGCTTTCACCCAAAATCGGACTTCCAATTAATGAAGAAGTTAAACCAAGCAAACTGGATTCTGAAGCAGTAGTTAATCCTGAGGATCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2019 0.4438 MASNQIQTSATNQAGATNDALYKELWHACAGPLVTLPREGERVYYFLQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHRQAEPETDEVYAQITLFPEADQGEVVSPNDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTAPANSQPTQRNKRSRPPILPSTMPDSSLQGVWKSPVESPSFTYRDPQHGRDLYASPKFNSTASNFLGFGGNNSASNKSIYWSNRMENTTESFSPVALKESAEKRQGTGNGCRLFGIQLLDNSNAEESLPTVTLSGRVGDDRSVPSLDGDSDQHSEPSNVNRSDIPSASCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYGDLLRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTVEEVKKLSPKIGLPINEEVKPSKLDSEAVVNPEDQSSIVGPGC* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0001 672 ProSiteProfiles PB1 domain profile. 548 641 IPR000270 GO:0005515
Dod03g0001 672 Gene3D - 543 637 - -
Dod03g0001 672 Gene3D - 123 228 IPR015300 -
Dod03g0001 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod03g0001 672 MobiDBLite consensus disorder prediction 489 541 - -
Dod03g0001 672 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod03g0001 672 PANTHER AUXIN RESPONSE FACTOR 9 9 650 - -
Dod03g0001 672 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Dod03g0001 672 SMART B3_2 126 228 IPR003340 GO:0003677
Dod03g0001 672 MobiDBLite consensus disorder prediction 359 395 - -
Dod03g0001 672 MobiDBLite consensus disorder prediction 653 672 - -
Dod03g0001 672 Pfam AUX/IAA family 545 638 IPR033389 -
Dod03g0001 672 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Dod03g0001 672 Gene3D - 289 362 - -
Dod03g0001 672 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Dod03g0001 672 SUPERFAMILY CAD & PB1 domains 550 625 - -
Dod03g0001 672 MobiDBLite consensus disorder prediction 509 541 - -
Dod03g0001 672 CDD B3_DNA 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0001 Dod-Chr3 26775 33317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0001 9 666 B3 DNA Binding Superfamily AT1G59750 71.752 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod03g0001 AUX_IAA 1.1e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0001 K14486 - gmx:100793224 1238.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0001 03 26775 33317 Dod03g0001 03 26775 33317 ECH