Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3718 ATGGATATCGAGGAGGACATCCGTTCTTTACAGCTTGAATCTGCAGAAGAGAATAATGGGGTTGTGAATCCGGAGGATGGGAAGCCAGAAGCAATTGATAAGTCTGATCATATGGATGAAGATCCAAAACAGGAAGTTGAGCCACAGCCTACGCAAGCTGAGCCAAAAGCGAAAGATAAGGAAATTCCTCCTGTGCGAGATGAAGATGATGATTCAGAGATAATGAAAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTGGCGAAAGATAAGGAAATTCCTCCTGTGCGAGATGAAGATGATGATTCAGAGATAATGAAAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTGGATGCTGGCAAGTCTACAACAGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGCAGAGAAAGCTGGTATATGGCTTATATTATGGACACAAACGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGTTATGTACCTAACATGATCAGTGGTGCATCTCAGGCTGATATTGGAGTGTTGGTGATTTCTGCTCGAAAGGGAGAGTTTGAAACGGGATATGAGAGAGGTGGACAAACCCGTGAACATGTCCAGCTTGCAAAAACGCTGGGGGTGGCGAAGCTGCTTGTTGTTGTCAATAAAATGGATGAACCTACAGTGAAATGGTCTAAAGAAAGGTATGATGAAATCGAGTCAAAGATGACACCATTTCTGAAACAATCTGGATACAATGTGAAAAAAGATGTCCTTTTTTTACCAATATCTGGGCTGATGGGTACAAACATGAAAACAAGAGTGGATAAAAACACTTGCCCGTGGTGGGGCGGTGCATGCCTATTTGAAGCTCTTGATGCTGTTGAAGTTCCTGAGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATAATCGACAAATTCAAAGACATGGGCACTGTTGTTATGGGAAAAGTGGAATCTGGTACTGTTCGTGAGGGGGATACCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCTAATTTTATTGATGAGGATCGGGTTAAACGTGCTGGACCTGGTGAGAATTTGCGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTAAGTGGGTTTGTCCTATCAAGTGTTGCAAATGCAATACCAGCCGTTACTGAGTTTGTTGCTCAACTGGCAATCCTTGAATTGCTTGATAATGCTATTTTTACTGCTGGCTATAAGGCTGTTCTGCACATCCACTCTGTAGTTGAAGAATGTGAGATCATTGAGCTCTTGCATCAAATTGATCCGAAGACGAGGAAGCCTATGAAAAAGAAGGTTCTCTTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGAGTTCAGGTTAATAACTTAATATGCATTGAGAAGTTTTCTGATTTTCCGCAACTTGGGAGATTCACTCTTCGTACTGAAGGCAAAACTGTTGCAGTGGGAAAAGTCACTGGTCTGTAA 1608 0.416 MDIEEDIRSLQLESAEENNGVVNPEDGKPEAIDKSDHMDEDPKQEVEPQPTQAEPKAKDKEIPPVRDEDDDSEIMKKRHLNVVFIGHVAKDKEIPPVRDEDDDSEIMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVKWSKERYDEIESKMTPFLKQSGYNVKKDVLFLPISGLMGTNMKTRVDKNTCPWWGGACLFEALDAVEVPERDPKGPFRMPIIDKFKDMGTVVMGKVESGTVREGDTLLVMPNKDQVKVVANFIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSSVANAIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGAVVVCRVQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3718 535 SUPERFAMILY Translation proteins 332 424 IPR009000 -
Dod02g3718 535 PRINTS GTP-binding elongation factor signature 113 126 IPR000795 GO:0003924|GO:0005525
Dod02g3718 535 PRINTS GTP-binding elongation factor signature 208 219 IPR000795 GO:0003924|GO:0005525
Dod02g3718 535 PRINTS GTP-binding elongation factor signature 252 261 IPR000795 GO:0003924|GO:0005525
Dod02g3718 535 PRINTS GTP-binding elongation factor signature 192 202 IPR000795 GO:0003924|GO:0005525
Dod02g3718 535 PANTHER TRANSLATION FACTOR 2 89 - -
Dod02g3718 535 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 165 180 IPR031157 -
Dod02g3718 535 MobiDBLite consensus disorder prediction 1 74 - -
Dod02g3718 535 Pfam Elongation factor Tu GTP binding domain 109 322 IPR000795 GO:0003924|GO:0005525
Dod02g3718 535 PANTHER BNAA06G12300D PROTEIN 2 89 - -
Dod02g3718 535 PANTHER TRANSLATION FACTOR 103 529 - -
Dod02g3718 535 Gene3D Translation factors 428 535 - -
Dod02g3718 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 344 IPR027417 -
Dod02g3718 535 Pfam Elongation factor Tu domain 2 353 419 IPR004161 GO:0005525
Dod02g3718 535 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 109 338 IPR000795 GO:0003924|GO:0005525
Dod02g3718 535 CDD EF1_alpha 113 334 - -
Dod02g3718 535 PANTHER BNAA06G12300D PROTEIN 103 529 - -
Dod02g3718 535 CDD eRF3_II 340 421 - -
Dod02g3718 535 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 430 534 IPR009001 -
Dod02g3718 535 MobiDBLite consensus disorder prediction 27 74 - -
Dod02g3718 535 Gene3D Translation factors 338 423 - -
Dod02g3718 535 CDD eRF3_C_III 427 535 - -
Dod02g3718 535 Pfam Elongation factor Tu C-terminal domain 427 534 IPR004160 -
Dod02g3718 535 Gene3D - 96 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3718 Dod-Chr2 75909589 75919666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3718 109 530 Eukaryotic Initiation Factors Gene Family AT5G60390 37.647 2.96e-93 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3718 K03267 - gmx:100793653 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3718 02 75909589 75919666 Dod02g3718 02 75909589 75919666 ECH