Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3652 ATGTCTTCTCCTTCAAAGAGCATCAGCTGTTCTAGTGAAGATGATAATGAACTTAGAAGAGGACCTTGGACTCATGAAGAGGATGAACTACTCACCAAATCCATTGCTAATCATGGGGAAGGAAGATGGAATTTGCTGGCTAAACGTTCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTAAATTATCTTAAGCCAGATGTAAAAAGAGGAAATTTAACCCCAGAAGAGCAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGTTACCAGGAAGAACAGACAATGAAATCAAGAACTACTGGAGAACTAGGATTCAGAAACAAGTAAAATATTTGAAAATTGACACAGATAGACCAGGATTTCATGAGATGCTTAAGGGTTTATGGAGGACAAGGTTTCTTCAGAAAGCAAAAGAATCATCTCCTTCTTCAGCCATTTCAGTTCAAAACCAAGCAATTCCACCGCCTCACGATGGTGTTTCTCAGTATTCAGTGATTGAGACAACACCAACAACACAAATCCCATGTCATGGAACTTGTGTGAAGGAAGAAGGCTCCAATTGTTTGGATCAACATGTGCAGAATTCAGATTCTGAGCACAACAATGGTTCATGCATGTCATCTTTAGAATCAGCAAATATCCCATATATGCATCAGCTTTTGGGATACACTACTAGTGCTAGTCAATTTCAGGCCTTAGATAACAGTGACTTTGGCACCAATGCATATGATAGTTACCAAGCATATAACAATGCCTATGAGATGATGGATGCCTTCAATATGACAGCTACAATGGTTGCTGAGGATATGGATTGTCCAATTGGTGATTGCCAGATGTCAGGAGACAATTGGCCAGACAGTGATTTTGCATATGTAGCATGTGGAACATGTATGAATCATGTCAATTTAGGAGCATTCTAA 960 0.3948 MSSPSKSISCSSEDDNELRRGPWTHEEDELLTKSIANHGEGRWNLLAKRSGLRRTGKSCRLRWLNYLKPDVKRGNLTPEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQVKYLKIDTDRPGFHEMLKGLWRTRFLQKAKESSPSSAISVQNQAIPPPHDGVSQYSVIETTPTTQIPCHGTCVKEEGSNCLDQHVQNSDSEHNNGSCMSSLESANIPYMHQLLGYTTSASQFQALDNSDFGTNAYDSYQAYNNAYEMMDAFNMTATMVAEDMDCPIGDCQMSGDNWPDSDFAYVACGTCMNHVNLGAF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3652 319 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 296 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod02g3652 319 Gene3D - 12 73 - -
Dod02g3652 319 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Dod02g3652 319 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Dod02g3652 319 MobiDBLite consensus disorder prediction 1 23 - -
Dod02g3652 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Dod02g3652 319 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Dod02g3652 319 CDD SANT 77 116 IPR001005 -
Dod02g3652 319 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Dod02g3652 319 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Dod02g3652 319 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 5 296 - -
Dod02g3652 319 SMART sant 72 120 IPR001005 -
Dod02g3652 319 SMART sant 19 69 IPR001005 -
Dod02g3652 319 CDD SANT 22 67 IPR001005 -
Dod02g3652 319 Gene3D - 75 132 - -
Dod02g3652 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3652 Dod-Chr2 74766867 74768670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3652 15 158 MYB Transcription Factor Family AT1G68320 65.972 5.20e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g3652 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3652 K09422 - gmx:778042 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3652 02 74766867 74768670 Dod02g3652 02 74766867 74768670 ECH