Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3639 ATGATATTCAAAGAAATGAAGGATTCAAGTGCATTGGGAGCCAAGACAGCAAGACCTTGTGATAGCTGCCTACGCATAAGAGCAAAGTGGTTCTGTGCAGCAGATGACGCATTCCTTTGCCATGCCTGTGACAACTTGGTGCACTCAGCAAACCAATTAGCCAGCAGGCATGAAAGGGTTAGGCTCCAAGCTGCTTCCTCCAATAAAGTCAACTACTCAGTGACCCCTAATAAGGTAACAACAAGTACCACACAAGCATGGCACAGTGGTTTCACACGCAAGGCAAGAACCCCACGTCATCATAACAAGAAGAATTATTTCTTGGTGCAACAACAACAACCCAAAGATGAAGAAGATGTTGATGAACAAGAAGTGCTTTTCAACAACAACAGTGTTCTTCCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCTACTTCTTGATGATGAGACTGAGGAGCACATGCTATGTCGTGTGCCTGTGTTTGACCCTTTTGATTCAGGGCTTTGCAGTTTGTACAATAAAGTGAAGGATGAGATATTGGACACCAACAACAACATGAAGAACGATGTTGTTGTTGGTGCTGATGATGAAGAAGAAGAAGTCTTTGACTTGGACAAATTCTCTGAGCTTCTGCCGTCAGATGTGGACCTTGCTGAGTTTGCAGCTGATGTAGAAAGCTTACTTGAACTTGATGAGGATTCAGTTGATGTGAAGGGATCAGAGATGGTATCTCGCAAGGAGGAAGATGTAAAAATAGATGCATTTGTGGGAGCAAAAGGTGCAATGGTTAAGGTTAAGGATGAAGAGAATATTGATGATGATATGGCTTGTAATTTGCAGTCAATTCTTGACATGAATGTTGAGGCCTTTGATTGGAGTATTGACTCAGAATCAATAGTAGCAGTTGCACATGAAGAGGAGAAAAAGGTTCCAGTGGTGGCAAGTGGTAGTGATAGTAGTAAAGTGGGGACTAAGAGGGAGAGGCTTTTGAGGCTAAACTATGAGGAGGTCATTGCTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACAGGAATCCCACCTAAGTTCAATACTGATGACTGTTGGCCAGACTACTTGGGTTCGAGTGGTGCAGATGTTCAATGCTCTTATGGGGGATTAAGAAGCTTAAGGGGGCACCCAACAGGGAGTGTTGATGAGGGGAGGGAAGCAAGAGTGTCAAGGTACCGAGAAAAGAGAAGAACACGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGCTGAATGCTGAGAAGAGACCTAGAATGAAAGGTCGGTCTAGTACTAATGGTAGCCCTCGCTTGTAA 1329 0.4424 MIFKEMKDSSALGAKTARPCDSCLRIRAKWFCAADDAFLCHACDNLVHSANQLASRHERVRLQAASSNKVNYSVTPNKVTTSTTQAWHSGFTRKARTPRHHNKKNYFLVQQQQPKDEEDVDEQEVLFNNNSVLPLVPELGSEELLLDDETEEHMLCRVPVFDPFDSGLCSLYNKVKDEILDTNNNMKNDVVVGADDEEEEVFDLDKFSELLPSDVDLAEFAADVESLLELDEDSVDVKGSEMVSRKEEDVKIDAFVGAKGAMVKVKDEENIDDDMACNLQSILDMNVEAFDWSIDSESIVAVAHEEEKKVPVVASGSDSSKVGTKRERLLRLNYEEVIAAWASQGSPWTTGIPPKFNTDDCWPDYLGSSGADVQCSYGGLRSLRGHPTGSVDEGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRSSTNGSPRL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3639 442 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Dod02g3639 442 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Dod02g3639 442 Pfam CCT motif 395 433 IPR010402 GO:0005515
Dod02g3639 442 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 433 - -
Dod02g3639 442 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 433 - -
Dod02g3639 442 CDD Bbox1_BBX-like 19 62 - -
Dod02g3639 442 ProSiteProfiles CCT domain profile. 395 437 IPR010402 GO:0005515
Dod02g3639 442 SMART bboxneu5 15 62 IPR000315 GO:0008270
Dod02g3639 442 MobiDBLite consensus disorder prediction 422 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3639 Dod-Chr2 74562869 74565260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3639 9 433 C2C2-CO-like Transcription Factor Family AT1G25440 41.242 2.62e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod02g3639 zf-B_box 7.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3639 - - gmx:100802113 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3048 04 54286406 54287846 Dod02g3639 02 74562869 74565260 PCT