Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3560 ATGGGGGAAGGTGAAGGAGGAAGTGATTGTGGTTCGAAGAATGTGACGTCATCGGATGCTGCTGCTGCAACGACGCCGCCTTTGGATGCTCCGGCAGCGGCGAAGAAGCTCGCCCGGCAGCTTGATTTTACGGGCTTGCCGGAACAACAGCAACAACAACCGCAACCGCAATCACAGCCACAATTGCATTCGCAGGTGCAGGTGCAGCAGCAGCAGCAGCAGATTGCGGCTCAGGTTGTCGCGGTGCAGCCGCAGATTGTGACTCAGCCACCGGTGGTTGTGAAGTCAGTGCCGCCGGCGGTGCCGCCTCAGGCACCTTTGGTGAGGGTCGGGAAACCAGATTCTCCAAAATCAAGATCAAGACCTAACTTTGAAATGAAAGAAGCTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCCAAATGTTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGCGATGGTTGCAACTGTGTAAATTGTTTTAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAGTTTTAATCTTAGGAAAGCATAACAAGGGGTGCCACTGTAAAAAATCGGGGTGCCTCAAGAAGTATTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGGAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCAAAATAACATGACATATATCCAGCAAGCAGCAAATGCTGCCATAACTGGAGCGATCGGTTCCTCTGGTTATTCATCACCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCATTGGGCAAACAGCCAAGGATCCACCCGTTAGCAAGTTGGGACAACAGGTAAACCATGTCCGAGGTCCAGCGCCCTCCTCATCCTTGTCCCCTATCCGTGGTACTCGTGTGGGAACTGCAACGCTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATCATACAGCCACAGCACCTGAAAGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCAAAGACACTTACAGACCAGAAAAATTTAATGGAAAAGCATACAGAAGATCAGACAGAAACTTCCCTAGCTTCTTCAACTCAATCACAATTACCAAATCAAAAGGAAAGTGATGTTGAGAAGGCTATGGCTGATGACTGTTCGAGTGCAAACCAAACAGAGAAAATCAGCCCAGATAATTCAAGTTCAGATGGTGCTGACGTCCCAAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGACGAGCAAGATACGTTTATGACGGCCGCCTCTCCCATTGGGACAATGGCCCATGGCTGCAACACTTCTTCGCAATTTCCTTATGGACAAGGAATGACAGAAGTCTATGCTGAGCAAGAAAGGATTGTATTAACGAAGTTTAGAGATTTTCTTAATAGAGTTATCACCATGGGAGAAATAAACGAAACAAAGTGTTCCTCATTAGCCAGAAGTGAATTAGAGAGCCAGAAGGATCCAACGATCAACAATGGCACCGGAAATGCCAGTACTGAGATCTTGCATCAGCAGGGAGCCACTGGCAATGGTGTTGCCAAGTCTGTAGTTATACCGGCCCCATCTGCGGCCACAGCTTCAGCCTCTAAGATCCCCGGTAATGTTGTTACAGAAAATGGGGAAACTAAGCTGAAGATTGAAAAATAG 1818 0.4653 MGEGEGGSDCGSKNVTSSDAAAATTPPLDAPAAAKKLARQLDFTGLPEQQQQQPQPQSQPQLHSQVQVQQQQQQIAAQVVAVQPQIVTQPPVVVKSVPPAVPPQAPLVRVGKPDSPKSRSRPNFEMKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMTYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFIGQTAKDPPVSKLGQQVNHVRGPAPSSSLSPIRGTRVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKNLMEKHTEDQTETSLASSTQSQLPNQKESDVEKAMADDCSSANQTEKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTFMTAASPIGTMAHGCNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPTINNGTGNASTEILHQQGATGNGVAKSVVIPAPSAATASASKIPGNVVTENGETKLKIEK* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3560 605 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 134 169 IPR005172 -
Dod02g3560 605 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 220 254 IPR005172 -
Dod02g3560 605 PANTHER TESMIN/TSO1-RELATED 32 587 IPR028307 -
Dod02g3560 605 MobiDBLite consensus disorder prediction 429 447 - -
Dod02g3560 605 MobiDBLite consensus disorder prediction 96 127 - -
Dod02g3560 605 MobiDBLite consensus disorder prediction 327 342 - -
Dod02g3560 605 MobiDBLite consensus disorder prediction 1 69 - -
Dod02g3560 605 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 32 587 - -
Dod02g3560 605 ProSiteProfiles CRC domain profile. 133 257 IPR005172 -
Dod02g3560 605 MobiDBLite consensus disorder prediction 403 419 - -
Dod02g3560 605 MobiDBLite consensus disorder prediction 390 462 - -
Dod02g3560 605 MobiDBLite consensus disorder prediction 44 69 - -
Dod02g3560 605 SMART CXC_2 217 258 IPR033467 -
Dod02g3560 605 SMART CXC_2 132 172 IPR033467 -
Dod02g3560 605 MobiDBLite consensus disorder prediction 310 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3560 Dod-Chr2 73157591 73165078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3560 35 572 CPP Transcription Factor Family AT4G29000 56.631 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dod02g3560 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3560 - - gmx:100818116 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3560 02 73157591 73165078 Dod02g3560 02 73157591 73165078 ECH