Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3554 ATGACCACCGCCGTCACGTCTGCCGAGATCCTCCGCCATACAACCGCGTTCCTCTCCGATGTCGTTTCGAATCGCGACCTCCGCCGCCGCCTCATCTCCGCCCTCCACAACGACACCTCCTCCTCCCCGATCCCCGACGAATCCGTCGCGAAACTCGCCGGCGACACTCTCGAAACCGCCATCTCCTTCTCCAGCACCGCCTCCCGTTCCTTCTCCCTCTCCCTCGCCGAGAACCTCATCCTCCCTCTCTCCGACAATCACCATCACCACCACCCGCTTCCTTCCTTTCTCCTCTCACTCATCCGAACCCTCCGCAACCGCCACCACGACGCCGCCGTCTCGCTCCTCCGGATCTTTCGATCCAATCCTTCCCTCGCCCGATCGGAGATCGCGCCAGCGCTCTACGACCGCCTGTTCTCCGTCCACCTGGTAGCCGTGTTCCAGCGGCTGCTGGAACGCAGGGCGCAGATCCTGTCTTCTTCGTCGAGTTCGGAAAGCGGCTACTCGCTGTCGAAGGTGGGCGAGGAGCAGGCCTCGAAGCTGAGGGAGCTGGAGAAGGAGTACGAAGAGATTCTCGACGAGAATTGCAGGGTTGTTGCGGTGCATTTTGAAGAGGTTTTGGTGAGCGGAGATGGAAAGGCGACGGTCGGTCCGCCGGTGCTGAAGCTGAAGAGCGGCGGAGATGGCGCCACAATGGAGAGCATTAACCAGAGGGAAGAGGTCGAGGAAACCGAAACGATTGCGTTGAAGAACGGACAATATGATAATCCAATGTGGAACGAAAGGGAAGAATCCAGTGAGTTTTTGAGCAGTGCTTCTTGCAGCAATTCCTCGTATGCACCATTTTATCCACAAAGAGTCTCTCCCAGAATCCTCAAACCCCAAAAATCTCCACAAAACTTTACAGCATCCGTCCATTCAAACTCGTCAGCTGAAACCGAGTCTTCTTTGGATGAGAATTTGATTTGTCCCAGTTCAGAATCTGAAGCAGAAAGTAAGGAAAAGGACGACAGGATAGCATTGTCACTGTTGAAGCCTCAACAAAGCCAAACTCAAGAACAAATGAAAATTATTCTTACAAGATCCATGAGTTGCCCAGATTATAATTTGGAAGACAACTATAGCCCGCTGCATGGAAGTGAAAAACAGGCACCTCCCAAGGACTTTGTGTGTCCATTAACTAGTAGCGTATTTGATGATCAAGTGACCCTTGAGACAGGTCAGACATTTGAACGCCAAGCTATTGAAGAATTGTCTAACAAGGGGAACACAACTTGCCCAATCACTCGCCAGAAGCTGCAAAAGACTCGCTTGCCTAAGACAAATCATGTGCTCAAACAGCTAATTGCAAGATGGAAAGAACAAAACCCCAATTCAGTCCCACTGTCTTGTGAGATTCCATATGAAGATACCGAGCCAGTAGTGCAGTCAGTGATGCATTCAATTTCTCCTAGCAGTGTTATATCGGAAGCCACAATTGATGGAATGCTTAGTGAATTGCGCCATGCAATCAACAACCTGTGTATGCCACAGTTGCTTGAGGAATCTGAAATAGCTGTGGTTCGAATTGCGCATCTATGGAGAGAACTGAACCTAGGAGCTGATATTCAGAGTATGCTATCAAAGCCCCCTATTATAAACAGGTTTATGGAGATACTTTTCAATTCTGTTTATTCTCAGGTGCTGCAAGCAGTTGTTTTCCTATTGGCTGAGATGAGTTTTAGAGAGAATATTGTTATTCAGATGCTTACCCAGGTGGACGCTGGTGTACAATGTATCATGGCTCTTTTCAAGAAGGGGTTGAAAGAAGCTGTTGTGTTGATATATCTCCTAAAACCTTCCACTACGAGTCTTGCAGATACGGGAATAGTGGAGGCTCTCGTAACAGTTGCCAATGAGAAAGAGGAAGAATTGCTTGAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTTGCACAGATTATTGGAAGCAGCGAAGAGAGGATTGCATCTTCGGTTGCCAAGACACTGTTATCTGGAAAAGTAATTGGAACTGTTATTGGCAGTTTGGGAGCAGAGTGGGCAGAGGAGAGGATTGCTGCAGTTGAGATCTTACTGAAATGCATGCAAGAAGATGGGACTTGCAGGAACATCATTGCTGAAAAGGCACAACTGTCTACTGTTTTGGAAAGCTTCATAGGTGCAACTGAAGGAGAACGTTTCAAGATGGTTCATTTCTTTTCTGAGTTAGTAAAACTGAACAGGAGAACATTCAATGAAGAAATCCTTCACACTATAAAGGAAGAAGGCCCTTTGAGTACAATGCATACTCTCCTCATTTGTCTGCAGACAGCCCATCAAGACCAATTTCCAATAGTGGCTGGCTTCTTACTTCAACTTGATCTTCTGGTAGAGCCAACAAAGATGAGCATATACGCTGAGGAGGCAATAGATACTCTTATCTCATGCCTGAGAAACACTCATTACCCTACTGTCCAATTAGCAGCTGCTGAGACAATCGTGTCACTGCACGGGAGGTTCAACTTTACTGGAATGCCTCTTACCAGAGAAGTCCTTCTTGAACGTGCTGGTCTTGACAGAAGTTATAGAACTTCTTTACAGATGGACGAGATCAGCAACTTCTACGAAGGAATTGAAGCATCAATGAAAGAAGAGAAAGCAGCTGATGAATGGGAAAGAAAAATTGCATTTGTTCTAGTTAGCCATGACTGTGGTCGACTTTTTGAGGCTATATCAGATGGCTTCAAGAGCCGAAGTGAAAAACTACGTTCAGCATGCTTTATATCAGCTACATGGCTCATATACATGCTCACTATTCTACCGGATACGGGAATACAAGCAGCAGCCCTAGTCTTCTTTCTCGAGCATTTCATATTCATATTAAAATCTGCCAAAGACACAGAAGACAAAATCCTTTCCATGCTTACTCTGAAAAGCTTTCTTCATTTCGATGATGGCTTTGGTGATCTCACTTCCAACCCTAAGGATATCATAAAAGGATTGCGAGAATTAGAGGTGTTCTCCCCCATGGCATCAGAAATCATGAAGGTTCTGGTTGAAGAACCTGAATCTAAAGCAGACATATGGATACATAAAGAGCTAATTCAAGCAGATTGCAATGAGAATGGAGAAGTGTTGTCTATCATTTTCTCTGAAGATAAAATGTTTTCAGGCCATTCAGATGGAACTATTAAGGTCTGGAAAGTAAAGGACAGGTTACTCCATCTCTTGCAAAAGACTAGAGAGCATATGAAGGATGTTACAAGCTTGGCAATTTCAGAATCTGGTGACAGATTATACAGTGGTTCACTTGATCGAACTGTAAAGGTTTGGTCTACTGGAAAGGCAGAAATACATCATGTACAGGAACATGACATGAAGGACCAGATTCATAATTTAGTTGTAGCAAATAGCATGTGTTGCTTCATTCCTCATGGCACTGGTATCAAGGTTAAGTCATGGAATGGAGAATCAAAGTTGTTAAACTCTAATAAATATGCAAAGTGCTTGGCTCTTGATGGGAGATTATACTGTGGGTGCCATGACGCTAGCATTCAGGAGATAGATTTGGCCACAGGAAAAGTCAGAACCATTCAAAGCAGTTCCAAAAAGTTACTTGGGAAAACAAGTCCTATTCATGCACTGCAAGTTCATGGTGAATTTATATACGCTGCTAGCTCTCCCTCTGATGGATCTGTCATAAAGGTATGGAACACTTCCACTTACAGTATGGTTGGATCACTGCAAACTGCATTGGAAGTGCGGGCCATGAAAGTGAGCTCGGAGCTAATTTATTTGGGGTGCAAAGGAGGAGTTGTGGAAATTTGGGATAGAAAGAAACACTACAGAGTTGACACATTACACAGCCGTGCGAATTGTAAGGTTCTTTGCATGGCTCTAGATAGCAATGAAGACATTTTGGTGGTTGGAACTTCCAATGGCCAAATTCAGGCATGGGGTGTCAAATAA 3975 0.4531 MTTAVTSAEILRHTTAFLSDVVSNRDLRRRLISALHNDTSSSPIPDESVAKLAGDTLETAISFSSTASRSFSLSLAENLILPLSDNHHHHHPLPSFLLSLIRTLRNRHHDAAVSLLRIFRSNPSLARSEIAPALYDRLFSVHLVAVFQRLLERRAQILSSSSSSESGYSLSKVGEEQASKLRELEKEYEEILDENCRVVAVHFEEVLVSGDGKATVGPPVLKLKSGGDGATMESINQREEVEETETIALKNGQYDNPMWNEREESSEFLSSASCSNSSYAPFYPQRVSPRILKPQKSPQNFTASVHSNSSAETESSLDENLICPSSESEAESKEKDDRIALSLLKPQQSQTQEQMKIILTRSMSCPDYNLEDNYSPLHGSEKQAPPKDFVCPLTSSVFDDQVTLETGQTFERQAIEELSNKGNTTCPITRQKLQKTRLPKTNHVLKQLIARWKEQNPNSVPLSCEIPYEDTEPVVQSVMHSISPSSVISEATIDGMLSELRHAINNLCMPQLLEESEIAVVRIAHLWRELNLGADIQSMLSKPPIINRFMEILFNSVYSQVLQAVVFLLAEMSFRENIVIQMLTQVDAGVQCIMALFKKGLKEAVVLIYLLKPSTTSLADTGIVEALVTVANEKEEELLEMCLKPKTAAVLLLAQIIGSSEERIASSVAKTLLSGKVIGTVIGSLGAEWAEERIAAVEILLKCMQEDGTCRNIIAEKAQLSTVLESFIGATEGERFKMVHFFSELVKLNRRTFNEEILHTIKEEGPLSTMHTLLICLQTAHQDQFPIVAGFLLQLDLLVEPTKMSIYAEEAIDTLISCLRNTHYPTVQLAAAETIVSLHGRFNFTGMPLTREVLLERAGLDRSYRTSLQMDEISNFYEGIEASMKEEKAADEWERKIAFVLVSHDCGRLFEAISDGFKSRSEKLRSACFISATWLIYMLTILPDTGIQAAALVFFLEHFIFILKSAKDTEDKILSMLTLKSFLHFDDGFGDLTSNPKDIIKGLRELEVFSPMASEIMKVLVEEPESKADIWIHKELIQADCNENGEVLSIIFSEDKMFSGHSDGTIKVWKVKDRLLHLLQKTREHMKDVTSLAISESGDRLYSGSLDRTVKVWSTGKAEIHHVQEHDMKDQIHNLVVANSMCCFIPHGTGIKVKSWNGESKLLNSNKYAKCLALDGRLYCGCHDASIQEIDLATGKVRTIQSSSKKLLGKTSPIHALQVHGEFIYAASSPSDGSVIKVWNTSTYSMVGSLQTALEVRAMKVSSELIYLGCKGGVVEIWDRKKHYRVDTLHSRANCKVLCMALDSNEDILVVGTSNGQIQAWGVK* 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3554 1324 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1323 - -
Dod02g3554 1324 Coils Coil 174 194 - -
Dod02g3554 1324 MobiDBLite consensus disorder prediction 295 327 - -
Dod02g3554 1324 ProSiteProfiles U-box domain profile. 384 459 IPR003613 GO:0004842|GO:0016567
Dod02g3554 1324 Pfam WD domain, G-beta repeat 1079 1114 IPR001680 GO:0005515
Dod02g3554 1324 Gene3D - 1174 1324 IPR015943 GO:0005515
Dod02g3554 1324 SUPERFAMILY ARM repeat 24 928 IPR016024 -
Dod02g3554 1324 SMART WD40_4 1243 1279 IPR001680 GO:0005515
Dod02g3554 1324 SMART WD40_4 1282 1322 IPR001680 GO:0005515
Dod02g3554 1324 SMART WD40_4 1200 1240 IPR001680 GO:0005515
Dod02g3554 1324 SMART WD40_4 1072 1114 IPR001680 GO:0005515
Dod02g3554 1324 SMART WD40_4 1033 1070 IPR001680 GO:0005515
Dod02g3554 1324 MobiDBLite consensus disorder prediction 295 336 - -
Dod02g3554 1324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1082 1114 - -
Dod02g3554 1324 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1323 - -
Dod02g3554 1324 Pfam U-box domain 386 456 IPR003613 GO:0004842|GO:0016567
Dod02g3554 1324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 463 IPR013083 -
Dod02g3554 1324 SMART Ubox_2 388 452 IPR003613 GO:0004842|GO:0016567
Dod02g3554 1324 Gene3D - 1030 1173 IPR015943 GO:0005515
Dod02g3554 1324 ProSiteProfiles Trp-Asp (WD) repeats profile. 1082 1123 IPR001680 GO:0005515
Dod02g3554 1324 SUPERFAMILY WD40 repeat-like 1047 1323 IPR036322 GO:0005515
Dod02g3554 1324 SUPERFAMILY RING/U-box 382 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3554 Dod-Chr2 73085800 73095603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3554 367 452 U-box Gene Family AT1G23030 40.698 2.59e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3554 - - gmx:100808867 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3554 02 73085800 73095603 Dod02g3554 02 73085800 73095603 ECH