Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3539 ATGCTGTTCCACAGTACCATAGTTTTGGCATGGAAATCAACCAGGCTATTGAGACATGACAGAAACTCAATGAGAATGATTGCATCTGGGAACTTCTCCCAAGCTACTACACAGGAAAATGTGCCTGATTGGGTCAAGATGGACAAGCGAAGAATGCTTCATGTTGTATACCGTGTTGGGGACTTGGACAGGACCATAAAATTTTATACTGAGTGCCTGGGAATGAAGTCGCTCAGAAAGTGCGACATGCCGGATCAGAGATATACCAATGCATTTCTTGGATATGGGCCTGAAGATGCACACTTTGTTATTGAACTGACATACAATTATGGGATTGACAAGTATGACATTGGAAATGGATTTGGCCATTTTGGCATTGCTGTTGATGATATTTCAAGAATAGTGGACATTGTAAGAGCTAAAGGTGGGAAAATAACTAGGGAACCTGGTCCTGTTAAGGGAGGCAGCTCCATAATTGCATTTATTGAAGATCCTGATGGTTGTAAATTTGAACTTTTGGAAAGGGCCCCATCTCCGGAACCTTTGTGCCAAGTAATGCTTCGAGTGGGTGATCTTAAGCGTTCCATGCTATTTTATGAGAAGGCTTTTGGTATGCAGCTACTTCGCACAAGAGATAATCCAGAATCCAAGGAAAAGAGATATAGGATCCTTTTCTAA 678 0.4174 MLFHSTIVLAWKSTRLLRHDRNSMRMIASGNFSQATTQENVPDWVKMDKRRMLHVVYRVGDLDRTIKFYTECLGMKSLRKCDMPDQRYTNAFLGYGPEDAHFVIELTYNYGIDKYDIGNGFGHFGIAVDDISRIVDIVRAKGGKITREPGPVKGGSSIIAFIEDPDGCKFELLERAPSPEPLCQVMLRVGDLKRSMLFYEKAFGMQLLRTRDNPESKEKRYRILF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3539 225 Gene3D - 23 177 IPR029068 -
Dod02g3539 225 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 184 215 IPR004360 -
Dod02g3539 225 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 52 172 IPR004360 -
Dod02g3539 225 TIGRFAM glyox_I: lactoylglutathione lyase 40 184 IPR004361 GO:0004462|GO:0046872
Dod02g3539 225 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 181 225 IPR037523 -
Dod02g3539 225 ProSitePatterns Glyoxalase I signature 1. 54 75 IPR018146 GO:0004462|GO:0046872
Dod02g3539 225 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 51 175 IPR037523 -
Dod02g3539 225 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 47 212 IPR029068 -
Dod02g3539 225 PANTHER LACTOYLGLUTATHIONE LYASE 11 217 - -
Dod02g3539 225 ProSitePatterns Glyoxalase I signature 2. 118 130 IPR018146 GO:0004462|GO:0046872
Dod02g3539 225 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 217 - -
Dod02g3539 225 ProSitePatterns Glyoxalase I signature 1. 184 205 IPR018146 GO:0004462|GO:0046872
Dod02g3539 225 Gene3D - 179 225 IPR029068 -
Dod02g3539 225 CDD GlxI_Ni 52 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3539 Dod-Chr2 72759605 72761563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3539 52 174 Calmodulin-binding Proteins AT1G08110 29.054 9.45e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3539 K01759 - gmx:100802155 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3539 02 72759605 72761563 Dod02g3539 02 72759605 72761563 ECH
Dod04g2971 04 53503585 53507741 Dod02g3539 02 72759605 72761563 PCT