Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3537 ATGTTTTCAATAACATTCATTCTCCTCATGTATGCAAAATTCTGTCAAAGGGGTGCAACAATTCCTCTTGGGGACCTAGAGAATCAACCAGCACTTGGGAGATCAAGGTCTAGAACTTCAGGTATTGATAAGACTGTCATAGAGTCACTGCCCTTCTTCAGATTCTCTTCCCTCAAAGGGTCAAAGGAAGGGTTGGAATGTGCAGTATGCTTATCAAAGTTTGAAGATGTAGAAATCCTCAGGCTTCTTCCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAACACTCAAGCTGTCCTCTTTGCAGGCATAAGGTCAACCCTGAGGACCAAACAATCTTTACATATTCAAACAGTTTAAGGAGGCTAGTAAACCAGTCATCAGGTCTAGGTGAAGAATCCAACATAGAGCTCTTTGTCCAAAGAGAGGAAGAACATCATGGTTCATCAAGATTCAGTATTGGAAGCAGCTTCAGGAAATTATTTGTGAAGGATATTAAGGAAGAGGAATTGCCAATACAAAAAGGCGCAGAAGAAGATAGTGATGGTGACCACAGGGGCTATCATAAGCATAACCACAGGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAGTGTGAGCTCTTCAGACCTCATGTTCTTGAATTCAGAGCTGCTTAATGATTCATCAAGCAGCAGATTCAATAACTTGGAATCAAACGGTGACCTGATGACAAGAAGAGGAGTAGAATATGATCAAATTATGAACATAAAGGAAGAGATGGAGAGGAAGATTTCCTTTGAGAGCAAGGTCGGTACACTAAACAAGATTAACTCAGTTTCAGATAGGGGGAATCCTTCTACATCAGATTCTACAGGGAATTCTAGTCATTCAATAAAGCATTTGAATCATGGTGAGAAAAGGTCAATGTCAGGAAATCACTGCTGTCTCTAG 960 0.4052 MFSITFILLMYAKFCQRGATIPLGDLENQPALGRSRSRTSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPLCRHKVNPEDQTIFTYSNSLRRLVNQSSGLGEESNIELFVQREEEHHGSSRFSIGSSFRKLFVKDIKEEELPIQKGAEEDSDGDHRGYHKHNHRITISDVVFKHRWSSVSSSDLMFLNSELLNDSSSSRFNNLESNGDLMTRRGVEYDQIMNIKEEMERKISFESKVGTLNKINSVSDRGNPSTSDSTGNSSHSIKHLNHGEKRSMSGNHCCL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3537 319 MobiDBLite consensus disorder prediction 279 301 - -
Dod02g3537 319 Pfam Ring finger domain 66 109 IPR001841 -
Dod02g3537 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 1 313 - -
Dod02g3537 319 SUPERFAMILY RING/U-box 46 115 - -
Dod02g3537 319 CDD RING-H2_PA-TM-RING 66 109 - -
Dod02g3537 319 SMART ring_2 67 108 IPR001841 -
Dod02g3537 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 1 313 - -
Dod02g3537 319 MobiDBLite consensus disorder prediction 279 319 - -
Dod02g3537 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 118 IPR013083 -
Dod02g3537 319 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3537 Dod-Chr2 72743167 72744864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3537 1 281 C3H Transcription Factor Family AT4G28890 50.662 1.15e-78 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3537 K10664 - gmx:100803207 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3537 02 72743167 72744864 Dod02g3537 02 72743167 72744864 ECH