Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3535 ATGGAGCAAAGAGTTAGCTCAGGGCCCCAAAATAAGCGTAGGCTTAACTTTGACCACTATAGCAAAGGGTTAACCAATGGTGGCAATGACAAACATCCAGTTGAGAAGAAAAAGAGGCCAATGAATCGTACAAAGCAGCTAAAAGCTTTGGTTGGAGCAGGACAAGACAGTGTATTTCATAATTTAGACTTCAGGGCCATTTTGATTTTAAGAGAAGAGTTCCGACTTTACAACATTACCTACAAACTTCATTATGAGAAGGGGAAGCAGAGTGGAAGCAAAAAGAGGAAAAACAAAAAACGAGAACCAGAAGACAACATTACAAAGGCTATGACTCACAAATATTCCAATGAGAATGGCATTCCAGTACTTACAACAACTACACATCTTTTAAGGCATCTTCGGGGAATGGCCAAATTTGGTGCAGACAAGGTCCATTTTATTCAAAGGGGTGTTCCTAAATCTCTGTTGCCTGAATATCCATGGTTGGTTAGTAGGGACCTTAGCAATGGCCAAGAAGATAAATGTATTCTTGCAACCAACATGTGTGATGATCCTCCTATTGCGCCTACTGGCTTTACATATATCAAATCTATACAAGTTTCAAGTAATGTGATAGTTCAACCTAGTGCTGAAGGATGCCGATGCAAGGGAAGTTGTACAAATGAAGTGACTTGTTCTTGTGCTGGTCTTAATGGCTCTGAGTTTCCATATGTTAATGGTGGCAGATTGATAGAAGCTAGAGATGTTATATTTGAATGTGGTCCAACATGTGGTTGTAGCCGTAAGTGTGGCAACGTAATTTCTCAGAAGGGCTTAAACTACCAACTAGAGGTTTATCGCACGCCCAAGAAAGGTTGGGCTGTTAGAACGTGGGACTTTATTCCTTCGGGTGCACCGGTCATTGAATATGTTGGTGTGCTTAGCAAAAGTGATGATTTAGAGAATGTCACAAACAATGACTACATATTTGATATTGATTGCTTGCAAACAATAAATGAGGTAGAAGGACGGAAGAAACGATTGCGTGATGTGTTGTTACCTAGAAACCCTTCTGCACAAAGGGACGGTAAGACAATGGAAAGTGGGCCTGAGTTTTGCATAGATGCTGGCTCATTTGGTAATGTTGCTAGATTCTTCAACCATAGTTGTAAGCCAAACATTTTTATTCAGTGCGTTCAGAGCCCCCACCTAAACATCAAGCAAGCTCGGGTGGTACTATTTGCCGCGCAAGACATAGAGCCTTATCAAGAACTTACATATGACTATGGTTACCAACTCGATAGTGTTAGTGGCCCGGATGGAAAAATCAAGCAGCTACCTTGTCATTGTGGGGCTCGTACATGTCAAAAACGGTTGTACTAG 1365 0.4132 MEQRVSSGPQNKRRLNFDHYSKGLTNGGNDKHPVEKKKRPMNRTKQLKALVGAGQDSVFHNLDFRAILILREEFRLYNITYKLHYEKGKQSGSKKRKNKKREPEDNITKAMTHKYSNENGIPVLTTTTHLLRHLRGMAKFGADKVHFIQRGVPKSLLPEYPWLVSRDLSNGQEDKCILATNMCDDPPIAPTGFTYIKSIQVSSNVIVQPSAEGCRCKGSCTNEVTCSCAGLNGSEFPYVNGGRLIEARDVIFECGPTCGCSRKCGNVISQKGLNYQLEVYRTPKKGWAVRTWDFIPSGAPVIEYVGVLSKSDDLENVTNNDYIFDIDCLQTINEVEGRKKRLRDVLLPRNPSAQRDGKTMESGPEFCIDAGSFGNVARFFNHSCKPNIFIQCVQSPHLNIKQARVVLFAAQDIEPYQELTYDYGYQLDSVSGPDGKIKQLPCHCGARTCQKRLY* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3535 454 SMART set_7 275 430 IPR001214 GO:0005515
Dod02g3535 454 MobiDBLite consensus disorder prediction 1 42 - -
Dod02g3535 454 SMART preset_2 165 259 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod02g3535 454 Pfam Pre-SET motif 169 266 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod02g3535 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 112 453 - -
Dod02g3535 454 SUPERFAMILY SET domain 156 430 IPR046341 -
Dod02g3535 454 Gene3D SET domain 160 454 IPR046341 -
Dod02g3535 454 ProSiteProfiles Post-SET domain profile. 438 454 IPR003616 -
Dod02g3535 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 112 453 - -
Dod02g3535 454 MobiDBLite consensus disorder prediction 87 106 - -
Dod02g3535 454 Pfam SET domain 286 424 IPR001214 GO:0005515
Dod02g3535 454 ProSiteProfiles SET domain profile. 275 424 IPR001214 GO:0005515
Dod02g3535 454 ProSiteProfiles Pre-SET domain profile. 212 272 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3535 Dod-Chr2 72713441 72720094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3535 112 454 EF-hand Containing Proteins AT5G13960 54.335 2.60e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod02g3535 SET 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3535 - K11420 mtr:MTR_7g052480 452.981