Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3474 ATGATGCTCGGGGAGCACCATCGAGCTAATCCAACGATTCACGTGCCTCCATGGCCAATACTCGACGATCCAACGGCTGAGATCTACTCGCCCTACTCCGTCGCCGAAGGCAATGCCGGCGGCGGCGATTACTCTCCCTACTATCTACAGGAAGCTCTCACGGCGCTCCAGCGCTACCTGCCGTCGAACGACGCTGTCACTGTCGCTGGCGACGGCGACTCGGAACCCGATTCCCACACCGACGCGCCGGTTGACGCCTACTCTTGCGACCAGTTCCGCATGTTCGAGTTCAAGGTCCGGCGCTGCGCGCGTGGGAGATCGCACGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCACGCCGCCGTGACCCGAGGAAGTTCCACTACTCCGGCACGGCGTGTCCTGATTTTCGCAAAGGGAACTGCAAGAAAGGAGACGCATGCGAATACGCGCACGGCGTCTTCGAGTGCTGGCTCCATCCTGCGCGTTACCGCACGCAGCCGTGTAAGGACGGCACGAGCTGCCGGCGAAGGGTGTGCTTCTTCGCACACACGCCAGAGCAGCTCCGCCTCGTGCCGCAGCAGAGTCCTCGCAGCGTGGACTCCTACGACGGATCTCCGTTAAGGCAGGTCTCCATGCCGTTCGCGAGTTCTCCGGCGTCGGTTTCTCCGCCGGCGAGTTCTCCAGCGGATTCGCCGCCGTTGTCTCCGATGACGCGATCTGTGGGATCGAGCTCCATCTCTGAGATGGTGGCTTCTCTTCGGAACCTGCAACTTGGAAAAGTGAAATCGATGCCTAACAGTAACAGAAACGTGACGGTCGGGTCTCCGGGTTTCGGGTCACCACGTGGGCCCGTAATCCGACCCGGGTTTTGTAGCTTGCCAAATACTCCGACTCAGGCTCCGGGTCGGGGCGGAGTTAGTTATTTTGATCTGTGGGAGAAGAGTTGTGAGGAAGAGCCGGTGATGGAGAGGGTTGAGTCTGGGAGGGACATAAGGGCGAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCTCTGAAGGGGTCGGGTTTGGGTTCCGGTTCGGGTCAATCGGGTGGAGTACCGGATGTTGGGTGGGTCTCTGAGCTTGTCAAGTAA 1128 0.5993 MMLGEHHRANPTIHVPPWPILDDPTAEIYSPYSVAEGNAGGGDYSPYYLQEALTALQRYLPSNDAVTVAGDGDSEPDSHTDAPVDAYSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSVDSYDGSPLRQVSMPFASSPASVSPPASSPADSPPLSPMTRSVGSSSISEMVASLRNLQLGKVKSMPNSNRNVTVGSPGFGSPRGPVIRPGFCSLPNTPTQAPGRGGVSYFDLWEKSCEEEPVMERVESGRDIRAKMFEKLSKENSLKGSGLGSGSGQSGGVPDVGWVSELVK* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3474 375 MobiDBLite consensus disorder prediction 347 375 - -
Dod02g3474 375 ProSiteProfiles Zinc finger C3H1-type profile. 132 158 IPR000571 GO:0046872
Dod02g3474 375 SMART c3hfinal6 131 157 IPR000571 GO:0046872
Dod02g3474 375 SMART c3hfinal6 166 189 IPR000571 GO:0046872
Dod02g3474 375 MobiDBLite consensus disorder prediction 195 249 - -
Dod02g3474 375 MobiDBLite consensus disorder prediction 195 228 - -
Dod02g3474 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 156 IPR000571 GO:0046872
Dod02g3474 375 PANTHER UNKEMPT FAMILY MEMBER 7 375 IPR045234 -
Dod02g3474 375 Gene3D - 131 194 - -
Dod02g3474 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3474 Dod-Chr2 71581848 71582975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3474 87 240 C2H2 Transcription Factor Family AT5G12850 59.375 4.68e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod02g3474 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3474 - - aprc:113867365 587.415