Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3423 ATGAAGACCCAGCCTGACAGTTCCGCCGCTGCCTCCGCCGCCCCCAATCCCGGCGAAGAGAAAAAGAGCATAAACCCGGAGCTGTGGCAAGCGTGTGCGGGGCCGCTGGTGAACCTTCCGCCGGCGGGGACTCACGTCATCTACTTCCCTCAAGGCCACAGTGAGCAGGTTGCTGCGTCTTTGAGGAAAGATGTGGATGCACAGATTCCAAGCTATCCTAATCTTTCATCCAAGTTGCTGTGTCTACTTCACAATGTTACTTTGCATGCTGACCCGGAGACTGATGAAGTTTATGCTCAGATGACACTTCAACCTGTGGCTTCTTATGATAAGGAAGCTTTGTTAAGATCAGATCTTGCTCTCAAGTCAAATAAGGCACAGCCTGAGTTTTTCTGCAAACAGCTGACAGCAAGTGATACGAGTACTCATGGAGGTTTCTCCGTGCCTCGTCGAGCAGCAGAGAAGATTTTCCCTCCTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTGGCTAGGGATTTGCACGATACTGTATGGACATTCCGCCATATATACCGAGGGCAACCAAAACGTCACTTGCTTACTACCGGATGGAGTCTCTTTGTCAGTGGAAAGAGGCTTTTTGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGCTTCTTCTGGGAATCAGACGAGCTAACAGGCAACCGACCAACATATCGTCCTCTGTTCTATCTAGTGATAGTATGCACATTGGGATTCTTGCTGCAGCTGCTCATGCTGCTGCAAACAATAGTCCCTTCACTGTCTTTTACAATCCTAGAACGAGCCCGTCGGAATTTGTTATTCCTTTATCCAAGTACTACAAGGCAGTGTACAGCCATCAAATATCACCTGGCATGCGTTTCCGAATGATGTTTGAAACGGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGAGATGGAAAAATTCACAATGGCGCAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAAAAGCGTAGCAGAGTCTCAATCTGGGAAATTGAACCCGTGACTGCTCCTTTTTTCATCTGCCCTCCCCCTTTCTTTAGAGCCAAGAGACCAAGACAACCAGGAATGCCTGATGATGATCCATCCGATTTTGAAAACCTTTTCAAGCGGACAATGCCCTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTACCTGGCCTGAGCTTAGTTCAATGGATGAGCATGCAGCCAAATTATGTGCCGTCCATGTCTGGATCTGTTTTACAAAATCTTCCTGGTGCAGATATTTCCCGTCAGCTAGGGTTTTCTACTCCCCAAATTCCACAGTCAAACAATGTAGCCTTCCATGCTCAGAGGCTACTTCAGACTGCACAACAACTTGATCACCTTCAGAAGTTACCATCAACATCTGGCACATTGGGAACAGTCATACAGCAGCAGCAGCTGGGTGATATCACTCAACAACCTAGGCAGAACATTGGAAATCAAACTCTTCCACAGAGTCAAGTTCAGGCCCAGCTCTTGCATCCCCAGAATCTTGTCCAAACTAACAATATTCTTCAACAGCAGCAACCTGCTGTTCAAAACCATCAACTCCATAGAAGTTTCACTCAGAACCCTCCACAGCAGCAGCAACAGCAACAGCAACAGCAACAGACAATTATGGGTCAGAATCAACAACAAAATTTGGTCCAACCTCCTATGCCTGATCATGTTCAACCATTACAGATGTCTGATAACCAGATTCAGCTTCAGTTGTTACAGAAGCTTCAACAACAGCAACAACAAACGTTGTTGGCACAGCAATCTGCACTGCAGCAGCCTTCTCAACTTGCTCAAATCCAAGATCAGCAGCAGAGGCAGCTTTTAGATGCATCCCAGAGCTATTCTAGGACACTAACGCCTGTGCTGGAAATTCCTCCTATCCTTCAAAATTCACTCTCTGATGGTAGTCCTATCACACATCAGATGGCAAAGGCTAATGGTGGGAACAATATTCAATTCTCTCATCTTCCTCAGCAGCCAAAGCTTCAGCAGCAGCAACCTGGCTTTCTGCCTGAAATATCTGGCCACATGGCACTGCCCCCTACCCCTACAACCAATCAGCTCTCTGCTGCTGGCACTGGCAGTAGTATACTGACCGGAACAGCTGGTGCAGGGCAATCTGTAATTACTGATGATGTTCCATCCTGTTCCACCTCACCTTCTACAAATAACTGTGCCGGTGCAGTTCCATCATTGATAAATTCCCGAATCCATAGAAGCGCAGTAACTGGCGACGACATGGCCCAGTCTGCTGCGACAATGTTGAGTTCAGGTGCCTTAGAAACCTTGTCATCAAATGCAAACTTGATAAAAGATTTACAGCCCAAGTCTGAAGTCAAGTCTTCTTTGAACATTTCCAAAAATCAGAATCAAGGGAATTTCGCTCCTCAACCATACTTGAATGGTGGTGCTGCCCAGACAGATTATTTGGATACATCATCTTCTACATCAGCTTGCCTCTCTCAGGGTGATGCTCATATGCATCAGAATAACAACCCATTATCTTACAATCCAGAGTCTATGATGTTTAGAGGCAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGAGCAATGTTCCATACAGCAGTAACATTGATAGCCAAATGGGAATGCTACTAAATCCAGAGTCCCTTTTAACAAAAGGCACATTGGGGCTGGGGAAGGATTTGTCTAATAATTTCGCTTCAGGAGGCGTGCTTGGAAACTATGAAAATAGCAGAGATGCTCAGCAGGAACTTTCATCGTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACTTTTAATTCTATTGAGTCGACAATAGATGATAGTAGCTTCCTGAATAGGGATGCATGGGCTCCACCACCACCACCACCACCACCACTGCCACCACCACAGTTCCAGCGAATGAGGACATATACCAAGGTTTATAAACGGGGAGCCGTTGGAAGGTCTATAGATATAACCCGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTAGCTCGTAGGTTTGGCATAGAGGGCCAGCTGGAGGATCGGCAAAGGATAGGCTGGAAACTAGTCTATGTAGATCATGAAAATGATGTTCTACTAGTGGGAGACGATCCGTGGGAGGAGTTTGTTAACTGTGTCCGCTGTATCAAAATACTCTCTCCCCAAGAAGTGCAACAGATGAGCTTGGACGGAGATTTCGGAAATGGTGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATGCTTGA 3342 0.4635 MKTQPDSSAAASAAPNPGEEKKSINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLRKDVDAQIPSYPNLSSKLLCLLHNVTLHADPETDEVYAQMTLQPVASYDKEALLRSDLALKSNKAQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRTSPSEFVIPLSKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRAKRPRQPGMPDDDPSDFENLFKRTMPWLGDDMCMKDPQGLPGLSLVQWMSMQPNYVPSMSGSVLQNLPGADISRQLGFSTPQIPQSNNVAFHAQRLLQTAQQLDHLQKLPSTSGTLGTVIQQQQLGDITQQPRQNIGNQTLPQSQVQAQLLHPQNLVQTNNILQQQQPAVQNHQLHRSFTQNPPQQQQQQQQQQQTIMGQNQQQNLVQPPMPDHVQPLQMSDNQIQLQLLQKLQQQQQQTLLAQQSALQQPSQLAQIQDQQQRQLLDASQSYSRTLTPVLEIPPILQNSLSDGSPITHQMAKANGGNNIQFSHLPQQPKLQQQQPGFLPEISGHMALPPTPTTNQLSAAGTGSSILTGTAGAGQSVITDDVPSCSTSPSTNNCAGAVPSLINSRIHRSAVTGDDMAQSAATMLSSGALETLSSNANLIKDLQPKSEVKSSLNISKNQNQGNFAPQPYLNGGAAQTDYLDTSSSTSACLSQGDAHMHQNNNPLSYNPESMMFRGNSQDGEVQADARSNVPYSSNIDSQMGMLLNPESLLTKGTLGLGKDLSNNFASGGVLGNYENSRDAQQELSSSMVSQTFGVPDMTFNSIESTIDDSSFLNRDAWAPPPPPPPPLPPPQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNA* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3423 1113 CDD B3_DNA 130 222 IPR003340 GO:0003677
Dod02g3423 1113 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Dod02g3423 1113 Gene3D - 295 366 - -
Dod02g3423 1113 SMART B3_2 131 233 IPR003340 GO:0003677
Dod02g3423 1113 ProSiteProfiles PB1 domain profile. 1001 1085 IPR000270 GO:0005515
Dod02g3423 1113 MobiDBLite consensus disorder prediction 554 576 - -
Dod02g3423 1113 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 1107 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod02g3423 1113 SUPERFAMILY CAD & PB1 domains 1014 1079 - -
Dod02g3423 1113 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Dod02g3423 1113 Gene3D - 996 1090 - -
Dod02g3423 1113 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Dod02g3423 1113 MobiDBLite consensus disorder prediction 1 22 - -
Dod02g3423 1113 Gene3D - 129 232 IPR015300 -
Dod02g3423 1113 PANTHER AUXIN RESPONSE FACTOR 12 1107 - -
Dod02g3423 1113 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod02g3423 1113 Pfam AUX/IAA family 1001 1086 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3423 Dod-Chr2 70780764 70788445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3423 20 464 B3 DNA Binding Superfamily AT1G19220 73.478 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod02g3423 B3 3.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3423 - - ccaj:109803454 1749.56