Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3390 ATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTCTGGAATTCCTTAGCCAAAGCTGCAGGTCTTAAACGTACTGGAAAGAGCTGCAGGCTCAGGTGGCTAAACTACCTTCGTCCTGATGTTAGGAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATAGCTAAGCATCTGCCTGGGCGGACTGACAATGAGATTAAGAACTTCTGGAGGACCAGGATCCAGAAGCATATCAAGCAAGCTGAGAGCTTCCAACAACAGAGCAGTTCATCCCATCATCATCTTCATGAGATGAATGATCATCACAATGCAAGCACTTCTAGCCAAGTATCCACCATGGCAGAGCCCATGGAGACCTATTCTCCACCCTCTTACCAAGGAATTTTGGAGCCATTATTTCCAACTCATCAGTACCCTACAATCCCTGATCAATCAAGTTGTTGTACCAATGACAACAACTACTGGAGCATGGAGGATATCTGGTCTATGCAATTACTCAATGGGGATTAA 570 0.4456 MEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAESFQQQSSSSHHHLHEMNDHHNASTSSQVSTMAEPMETYSPPSYQGILEPLFPTHQYPTIPDQSSCCTNDNNYWSMEDIWSMQLLNGD* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3390 189 Gene3D - 53 126 - -
Dod02g3390 189 MobiDBLite consensus disorder prediction 122 139 - -
Dod02g3390 189 MobiDBLite consensus disorder prediction 102 146 - -
Dod02g3390 189 SMART sant 2 45 IPR001005 -
Dod02g3390 189 SMART sant 48 96 IPR001005 -
Dod02g3390 189 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 186 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod02g3390 189 Gene3D - 1 48 - -
Dod02g3390 189 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Dod02g3390 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 43 IPR017930 -
Dod02g3390 189 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 186 - -
Dod02g3390 189 CDD SANT 53 92 IPR001005 -
Dod02g3390 189 ProSiteProfiles Myb-like domain profile. 44 94 IPR001005 -
Dod02g3390 189 Pfam Myb-like DNA-binding domain 2 43 IPR001005 -
Dod02g3390 189 Pfam Myb-like DNA-binding domain 49 92 IPR001005 -
Dod02g3390 189 SUPERFAMILY Homeodomain-like 2 90 IPR009057 -
Dod02g3390 189 CDD SANT 2 43 IPR001005 -
Dod02g3390 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 98 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3390 Dod-Chr2 70056436 70059746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3390 1 189 MYB Transcription Factor Family AT3G01530 55.556 4.00e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g3390 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3390 K09422 - gmx:778046 320.472