Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod02g3384 | ATGTCCAGAATGGGCCCCACTGCATTGGTTCTGGCCCCAACAAGGGAGTTGGCAACGCAGATTCAGGATGAAGCTGTGAAGTTTGGAAAATCATCAAAAATTTCTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAAGTAAGAGAACTCGATAGCGGAGTAGATATCGTGGTAGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAAAAATTGTCTTCACCGGGTCTCTTACCTTGTGCTGGATGAGGCAGATAGGATGCTAGACATGGGCTTTGAACCTCAAATTAGGAAGATTGTAAATGAGGTGCCTACTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCCAAGGAGGTTAGGAAAATTGCAGCTGATCTCCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTGGATGAGCTTGTTGCTAACAAGTCAATTACTCAGCATGTTGAAGTATTGGCCTCCATGGAGAAACACAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCAAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACGCGACAATTTGGTGCTGCTGCTATTCACGGTGATAAATCCCAGACTGAGAGGGACCATGTGTTGAACCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGACATCAAAGACATTAGGGTGGTTGTGAACTATGACTTCCCAACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTGTAGCTTACACTTTCTTTGGGGAGCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGCGAGTTCCTCCAGAACTTCGTGATATGGCATCACGGGGTGGTGGGATGGGCAGATCCAGACGATGGGGTTCTACTGGCCGTGGGGGACGTGTTGACTCTGGATATGGTGGAAGGAATAATGACACTGGATATGGTGGAAGGGGTAGTGATGCTGGCTATGGTGGAAGAGGCAGTGATTCTAGCTATGGAGGAAGGGGTGGGTGGACTGGTGCTTCTGGCAGAGGTGGAGGCCGTGGGTCAGACTATGATTCACAGAGGAATGATCGTGGGCGAAGCCCCGACAGGGGATCTAATTGGAGTGATCGCTTCAAAAATCGTGATCGCAGCCGCAGTCGCAGTCGTAGTCCTCACAGGGCTGCCCCCTTTCAATATTCCCAAGGCAGCTTTCACAAAGCAATGATGGAACGCGGTGGAGGAGATGGTGATCGCAACAAGAGCTATAACCAGGACCGAAGCCGCAGTCGTAGTCCTTACAATAAGGAGAGGGCTCCAGCAGCTAGTGAACGTTCTCCAGCTTACAGTTTTCATCGATCAATGATGGGACACGGTCAATCATCCCCTCCAACTCAACGACAGCGCGTAGATGAAAAAGGTTCTAGATATGGATGCAGTCCTCACCGATCCCCTGGTGGTGGTAGATCTAACAATAGTCCTCAAAAGGAGTGGGGAGGATCTCTGGGTGATGGAAGATATGGTGGGTCACATTCTTCCTACAATGGAGAAGAGGAGGAAGGGATGATACCTGATGAAGAAGGCATGATAACTCAAGATGATGGCATATATCAAAATGAGGATTAG | 1701 | 0.4815 | MSRMGPTALVLAPTRELATQIQDEAVKFGKSSKISCACLYGGAPKGPQVRELDSGVDIVVATPGRLNDILEMRKNCLHRVSYLVLDEADRMLDMGFEPQIRKIVNEVPTRRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLASMEKHRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQTERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGEQDAKYASDLIKVLEGANQRVPPELRDMASRGGGMGRSRRWGSTGRGGRVDSGYGGRNNDTGYGGRGSDAGYGGRGSDSSYGGRGGWTGASGRGGGRGSDYDSQRNDRGRSPDRGSNWSDRFKNRDRSRSRSRSPHRAAPFQYSQGSFHKAMMERGGGDGDRNKSYNQDRSRSRSPYNKERAPAASERSPAYSFHRSMMGHGQSSPPTQRQRVDEKGSRYGCSPHRSPGGGRSNNSPQKEWGGSLGDGRYGGSHSSYNGEEEEGMIPDEEGMITQDDGIYQNED* | 567 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod02g3384 | 566 | SMART | ultradead3 | 1 | 155 | IPR014001 | - | |
Dod02g3384 | 566 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 167 | 311 | IPR001650 | - | |
Dod02g3384 | 566 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 138 | IPR014001 | - | |
Dod02g3384 | 566 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 4 | 408 | - | - | |
Dod02g3384 | 566 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 5 | 289 | IPR027417 | - | |
Dod02g3384 | 566 | SMART | helicmild6 | 192 | 272 | IPR001650 | - | |
Dod02g3384 | 566 | MobiDBLite | consensus disorder prediction | 436 | 459 | - | - | |
Dod02g3384 | 566 | MobiDBLite | consensus disorder prediction | 382 | 409 | - | - | |
Dod02g3384 | 566 | Pfam | Helicase conserved C-terminal domain | 164 | 272 | IPR001650 | - | |
Dod02g3384 | 566 | MobiDBLite | consensus disorder prediction | 304 | 566 | - | - | |
Dod02g3384 | 566 | CDD | SF2_C_DEAD | 152 | 281 | - | - | |
Dod02g3384 | 566 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 | 4 | 408 | - | - | |
Dod02g3384 | 566 | Gene3D | - | 143 | 314 | IPR027417 | - | |
Dod02g3384 | 566 | Gene3D | - | 1 | 142 | IPR027417 | - | |
Dod02g3384 | 566 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 84 | 92 | IPR000629 | - | |
Dod02g3384 | 566 | Pfam | DEAD/DEAH box helicase | 5 | 127 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod02g3384 | Dod-Chr2 | 69988764 | 69991019 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod02g3384 | 8 | 310 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.853 | 6.87e-55 | 189 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod02g3384 | K12823 | - | gmx:100816455 | 770 |