Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3384 ATGTCCAGAATGGGCCCCACTGCATTGGTTCTGGCCCCAACAAGGGAGTTGGCAACGCAGATTCAGGATGAAGCTGTGAAGTTTGGAAAATCATCAAAAATTTCTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAAGTAAGAGAACTCGATAGCGGAGTAGATATCGTGGTAGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAAAAATTGTCTTCACCGGGTCTCTTACCTTGTGCTGGATGAGGCAGATAGGATGCTAGACATGGGCTTTGAACCTCAAATTAGGAAGATTGTAAATGAGGTGCCTACTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCCAAGGAGGTTAGGAAAATTGCAGCTGATCTCCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTGGATGAGCTTGTTGCTAACAAGTCAATTACTCAGCATGTTGAAGTATTGGCCTCCATGGAGAAACACAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCAAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACGCGACAATTTGGTGCTGCTGCTATTCACGGTGATAAATCCCAGACTGAGAGGGACCATGTGTTGAACCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGACATCAAAGACATTAGGGTGGTTGTGAACTATGACTTCCCAACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTGTAGCTTACACTTTCTTTGGGGAGCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGCGAGTTCCTCCAGAACTTCGTGATATGGCATCACGGGGTGGTGGGATGGGCAGATCCAGACGATGGGGTTCTACTGGCCGTGGGGGACGTGTTGACTCTGGATATGGTGGAAGGAATAATGACACTGGATATGGTGGAAGGGGTAGTGATGCTGGCTATGGTGGAAGAGGCAGTGATTCTAGCTATGGAGGAAGGGGTGGGTGGACTGGTGCTTCTGGCAGAGGTGGAGGCCGTGGGTCAGACTATGATTCACAGAGGAATGATCGTGGGCGAAGCCCCGACAGGGGATCTAATTGGAGTGATCGCTTCAAAAATCGTGATCGCAGCCGCAGTCGCAGTCGTAGTCCTCACAGGGCTGCCCCCTTTCAATATTCCCAAGGCAGCTTTCACAAAGCAATGATGGAACGCGGTGGAGGAGATGGTGATCGCAACAAGAGCTATAACCAGGACCGAAGCCGCAGTCGTAGTCCTTACAATAAGGAGAGGGCTCCAGCAGCTAGTGAACGTTCTCCAGCTTACAGTTTTCATCGATCAATGATGGGACACGGTCAATCATCCCCTCCAACTCAACGACAGCGCGTAGATGAAAAAGGTTCTAGATATGGATGCAGTCCTCACCGATCCCCTGGTGGTGGTAGATCTAACAATAGTCCTCAAAAGGAGTGGGGAGGATCTCTGGGTGATGGAAGATATGGTGGGTCACATTCTTCCTACAATGGAGAAGAGGAGGAAGGGATGATACCTGATGAAGAAGGCATGATAACTCAAGATGATGGCATATATCAAAATGAGGATTAG 1701 0.4815 MSRMGPTALVLAPTRELATQIQDEAVKFGKSSKISCACLYGGAPKGPQVRELDSGVDIVVATPGRLNDILEMRKNCLHRVSYLVLDEADRMLDMGFEPQIRKIVNEVPTRRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLASMEKHRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQTERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGEQDAKYASDLIKVLEGANQRVPPELRDMASRGGGMGRSRRWGSTGRGGRVDSGYGGRNNDTGYGGRGSDAGYGGRGSDSSYGGRGGWTGASGRGGGRGSDYDSQRNDRGRSPDRGSNWSDRFKNRDRSRSRSRSPHRAAPFQYSQGSFHKAMMERGGGDGDRNKSYNQDRSRSRSPYNKERAPAASERSPAYSFHRSMMGHGQSSPPTQRQRVDEKGSRYGCSPHRSPGGGRSNNSPQKEWGGSLGDGRYGGSHSSYNGEEEEGMIPDEEGMITQDDGIYQNED* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3384 566 SMART ultradead3 1 155 IPR014001 -
Dod02g3384 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 167 311 IPR001650 -
Dod02g3384 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 138 IPR014001 -
Dod02g3384 566 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 408 - -
Dod02g3384 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 289 IPR027417 -
Dod02g3384 566 SMART helicmild6 192 272 IPR001650 -
Dod02g3384 566 MobiDBLite consensus disorder prediction 436 459 - -
Dod02g3384 566 MobiDBLite consensus disorder prediction 382 409 - -
Dod02g3384 566 Pfam Helicase conserved C-terminal domain 164 272 IPR001650 -
Dod02g3384 566 MobiDBLite consensus disorder prediction 304 566 - -
Dod02g3384 566 CDD SF2_C_DEAD 152 281 - -
Dod02g3384 566 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 4 408 - -
Dod02g3384 566 Gene3D - 143 314 IPR027417 -
Dod02g3384 566 Gene3D - 1 142 IPR027417 -
Dod02g3384 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 84 92 IPR000629 -
Dod02g3384 566 Pfam DEAD/DEAH box helicase 5 127 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3384 Dod-Chr2 69988764 69991019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3384 8 310 Eukaryotic Initiation Factors Gene Family AT3G19760 34.853 6.87e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3384 K12823 - gmx:100816455 770