Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3383 ATGGAGCTGGATCCAGGGTTCCAACACCAATTTCAATTCCCATACCTTTCCACCGTTTTCTACGAAAATCCCACCTCAAAGCCACAAATTCCGACCCCAATGCTTCCCTCACAAGGCTTGACTTCAATTCCACCACAACCCAACAACCCTTTCTTCCAATGCACCACCAACAACAACAACAATACTCTTGATATCATGAATGTGCCTAATAACACCAACCCTTTCTGTGGGATTTCAACTCCTCCTTGCTTGGGTCAAGCTGCTTCCTCAAATGGGCCCATCATACAAAATTTTATCACCCCTAGTACTACTACTACTACTACCGTTACCTTTGCATCACAAAACAGTGCTTCGTTGCATGACCTGAACAACAATAGTGCTAGTGGCCAAGTTATGTGGGATCTTCCTCAAGAAACTGCAATTGTTATTCCAACTCACACAACTTGTTCATCTCATCACCCTTCACCACCACCAGTTTCTGGTGGACAAGGGTTGATGGTGAGGGCCAGCATTAAGAAGGAGTCGCAACGCGTCAAAGAGAATGATCAAAGGGCTAATGATAACGGTGATGGTAAGATTAGGAGGCGGTGCAAGAGGGTAAAGGTGCAAAATGATGGCAATAACACTGGTAACATGAGCAAAGGGCAATGGAGTCAAGATGAGGACAGTGTTCTCATGGAATTGGTGAATGAGCATGGATTGAAGAAATGGTCGAAAATCGCAAAGTCACTTGATGGAAGGATTGGAAAGCAATGTCGGGAGAGATGGTACAACCATCTCCGGCCAAATATTAAGAAGGGGTCATGGACCGAAGAGGAAGACATAATTCTTATCAAAGCCCACCAAGAAGTTGGGAACAAATGGACAGAAATTGCAAAGAGATTACCGGGTAGGACTGATAACTCTCTGAAGAACCGTTGGAATGCCACCAAGAGGCGCCGCAACACCAACACTTCTGATGGGTCACAACTCCAAGCCTACATCAAGGAAATCACTGCAGCTAAACAAGTAGAAGAAGCATCACCAAAGAAGATGAACAACAATAAATCCAATGATGTCAAGACATTCAATAATAATAGCTACAACACCAATGATATTGGCCTCATGCTTCGTTTGGTGTTCCCAAATCATGACTTCACCAATGAAGCTTGGGCTGCTGAGTTGTTTGATGCACCCATATGA 1182 0.4425 MELDPGFQHQFQFPYLSTVFYENPTSKPQIPTPMLPSQGLTSIPPQPNNPFFQCTTNNNNNTLDIMNVPNNTNPFCGISTPPCLGQAASSNGPIIQNFITPSTTTTTTVTFASQNSASLHDLNNNSASGQVMWDLPQETAIVIPTHTTCSSHHPSPPPVSGGQGLMVRASIKKESQRVKENDQRANDNGDGKIRRRCKRVKVQNDGNNTGNMSKGQWSQDEDSVLMELVNEHGLKKWSKIAKSLDGRIGKQCRERWYNHLRPNIKKGSWTEEEDIILIKAHQEVGNKWTEIAKRLPGRTDNSLKNRWNATKRRRNTNTSDGSQLQAYIKEITAAKQVEEASPKKMNNNKSNDVKTFNNNSYNTNDIGLMLRLVFPNHDFTNEAWAAELFDAPI* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3383 393 Pfam Myb-like DNA-binding domain 214 260 IPR001005 -
Dod02g3383 393 Pfam Myb-like DNA-binding domain 266 308 IPR001005 -
Dod02g3383 393 ProSiteProfiles Myb-like domain profile. 261 311 IPR001005 -
Dod02g3383 393 SUPERFAMILY Homeodomain-like 212 307 IPR009057 -
Dod02g3383 393 SMART sant 265 313 IPR001005 -
Dod02g3383 393 SMART sant 213 262 IPR001005 -
Dod02g3383 393 Gene3D - 207 266 - -
Dod02g3383 393 CDD SANT 268 311 IPR001005 -
Dod02g3383 393 Gene3D - 268 338 - -
Dod02g3383 393 PANTHER MYB PROTEIN-RELATED 133 359 - -
Dod02g3383 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 260 IPR017930 -
Dod02g3383 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 315 IPR017930 -
Dod02g3383 393 MobiDBLite consensus disorder prediction 173 196 - -
Dod02g3383 393 ProSiteProfiles Myb-like domain profile. 209 260 IPR001005 -
Dod02g3383 393 PANTHER MYB DOMAIN PROTEIN 100-RELATED 133 359 - -
Dod02g3383 393 CDD SANT 217 260 IPR001005 -
Dod02g3383 393 MobiDBLite consensus disorder prediction 173 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3383 Dod-Chr2 69972595 69977498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3383 212 354 MYB Transcription Factor Family AT4G18770 54.362 2.77e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g3383 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3383 K09422 - ccaj:109801641 208.764