Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3370 ATGGCCTCTTCTAGCTACTCCAACTCTCCATGTGCTGCATGCAAGTTCTTGAGAAGGAAATGCTTGCCAGATTGCATCTTTGCCCCATATTTCCCACCAGAGGAGCCTCAAAAGTTTGCCAATGTTCACAAGATCTTTGGTGCAAGCAATGTGAGCAAGCTCCTCAATGAGGTCCTACCCCATCAAAGGGAAGATGCAGTGAACTCTTTGGCCTATGAAGCCGAGGCAAGGATAAAAGATCCAGTGTATGGCTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCAACAAATGCTGATTTGATGCGCTATACTTGTAATGAAGTTCCAACTACTTCTCAATCTGGGAGGAGGATGGGTGGTGAAGAAGGAGGTTCCTCTCTTGGTAATTTTCCTCATGGTAATTTTTATTACCATTCTAGTAGTTGGAATAATGATGCTTCCGGGGAGGGCTACCACAGAGGTGATAACAATATGTGA 507 0.4497 MASSSYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLMRYTCNEVPTTSQSGRRMGGEEGGSSLGNFPHGNFYYHSSSWNNDASGEGYHRGDNNM* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3370 168 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Dod02g3370 168 Coils Coil 89 109 - -
Dod02g3370 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 156 - -
Dod02g3370 168 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Dod02g3370 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3370 Dod-Chr2 69817098 69819174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3370 4 129 AS2 family AT3G27650 80.315 8.65e-72 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod02g3370 LOB 8.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3370 - - gmx:100800167 285.804