Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3368 ATGGGAACTTCCAAACACAGTTCCACTTTCACCCACATCGCCTCAAGGGAGCTCAATTCCTTCCGAGTTCGTAAACGGCCTCACATGGATGGATTCTTCACTGGCTTCGGAGAGCTCGGAGCTCTCGCCGTTCAGCACAACGCCGACAACACCATTCCCTTGTCTCTCTCCTTCTGCAAGACCTCCAAATTTTCACACATTCTGGCTTTATCTGATGAGGATGGATACTTGACCTTGCTTGATACTCGTCGCAAATTCTCCGTTACTTCATCATTTGAAGAAAACGCAGAGAAAGCGAAGATTTGTGATTGGGTTTCGCATCTGAATGCTGTTTTTGATGTTTGTTGGATTAAGGACGATACCCAGATTCTCACAGCTTCTGGTGATCAAACAATGAAGGTATGGGATGTACAAGAAAAGAAATGTATTGGAGTGTTGATCGGGCACACTGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATGCTGATATTATTGTCTCCGGTTCAAGAGATGGATCCTTTTGTCTTTGGGACTTAAGATGCAAATCCACTACCAAGGGTAGGCATGGAGAAGCTAGCATATGTTCAACGGCTGTTGTCAAAGGACCACATGTTTCATCTCAACCAAAACGAGTCAGAAAGAGCAAGGCTAATTCCATGAGCATTACATCTGTTCTCTATCTCAAGGATCAGGTTTCCCTAGCCACTGCTGGGGCAGTGGATAGTGTGTTGAAATTTTGGGATACCAGAAATTTGAAAAGTTTTGTCACACAGGCATGCCCTCGTCCTCCGTCAACGGAAAAGGAAAGATTACATGGTGTATCTAGCTTGTCCCAAGATGAGAGTGGTCTTTTTCTTTCAGCATCCTGCATGGATAACTGCATTTATCTCTATAACATCCTTCAGCTTGAAAAGGGGCCTCTCAGATCTTTTCCAGGATGTCGAATAGAATCATTTTTTGTAAAGTCTGCGATTAGCCCTGATGCATCTCAGATAGTCAGTGGTTCTAGTGATGGAAATGCCTACGTTTGGCAGGTTAACAAGCCTCAAGAGATGCCTGTAACTTTGAAAAGTCATGACGGGGAAGTTACTGCGGTTGACTGGTGCCGCACTGAGGATGGTAAATTAGCAACTGCTTCTGATGATTTCACAGTTCGGATTTGGAATAAAACCAATTATATCTGCAGCACAAAGACATCATGTTCCATCCGAAGAAGAGTAATGGCAATGCCTAGCATAGAAAGCAAAGTGCTATTAAATAGTGAAAAATTGTGTCCCAAGTCAATGGACAAATCCAATGAAGCACTGCACCAACCAATTAACTCAGAAACTCCAGTCACACCACCTAAAATGCTTGCATCTGAAGGCCATAAGAACCGGCTATCCTCAGGATTTGATCCGACTGGATCATCTGAAAAAACTCCAGAATCTGCTATGAAGAGCCCCTCATCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACTATCCGGGACTACTTTTTAGCATCCTCATGA 1518 0.4348 MGTSKHSSTFTHIASRELNSFRVRKRPHMDGFFTGFGELGALAVQHNADNTIPLSLSFCKTSKFSHILALSDEDGYLTLLDTRRKFSVTSSFEENAEKAKICDWVSHLNAVFDVCWIKDDTQILTASGDQTMKVWDVQEKKCIGVLIGHTGSVKSMCSHPTNADIIVSGSRDGSFCLWDLRCKSTTKGRHGEASICSTAVVKGPHVSSQPKRVRKSKANSMSITSVLYLKDQVSLATAGAVDSVLKFWDTRNLKSFVTQACPRPPSTEKERLHGVSSLSQDESGLFLSASCMDNCIYLYNILQLEKGPLRSFPGCRIESFFVKSAISPDASQIVSGSSDGNAYVWQVNKPQEMPVTLKSHDGEVTAVDWCRTEDGKLATASDDFTVRIWNKTNYICSTKTSCSIRRRVMAMPSIESKVLLNSEKLCPKSMDKSNEALHQPINSETPVTPPKMLASEGHKNRLSSGFDPTGSSEKTPESAMKSPSSVLNPPSSLKRTIRDYFLASS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 355 IPR001680 GO:0005515
Dod02g3368 505 PANTHER BNAA06G31940D PROTEIN 1 503 - -
Dod02g3368 505 SUPERFAMILY WD40 repeat-like 59 400 IPR036322 GO:0005515
Dod02g3368 505 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Dod02g3368 505 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Dod02g3368 505 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Dod02g3368 505 Gene3D - 204 437 IPR015943 GO:0005515
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Dod02g3368 505 MobiDBLite consensus disorder prediction 438 492 - -
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Dod02g3368 505 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 1 503 - -
Dod02g3368 505 MobiDBLite consensus disorder prediction 462 492 - -
Dod02g3368 505 SMART WD40_4 305 346 IPR001680 GO:0005515
Dod02g3368 505 SMART WD40_4 209 249 IPR001680 GO:0005515
Dod02g3368 505 SMART WD40_4 139 179 IPR001680 GO:0005515
Dod02g3368 505 SMART WD40_4 265 300 IPR001680 GO:0005515
Dod02g3368 505 SMART WD40_4 350 390 IPR001680 GO:0005515
Dod02g3368 505 SMART WD40_4 97 136 IPR001680 GO:0005515
Dod02g3368 505 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Dod02g3368 505 Pfam WD domain, G-beta repeat 106 136 IPR001680 GO:0005515
Dod02g3368 505 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Dod02g3368 505 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Dod02g3368 505 Gene3D - 38 188 IPR015943 GO:0005515
Dod02g3368 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3368 Dod-Chr2 69796403 69800934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3368 107 345 U-box Gene Family AT1G04510 26.437 4.98e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3368 K11790 - gmx:100819114 750.74