Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3363 ATGGACTCAACCGGTAATGACCAATTCGTGGGTGGTGGAGAACCCTTCTCTCACAGAGAAGAACACGAAGAACAACCCCAACAAGAAGACCTAGAAGAAGAACATGAATTCCAGCAACACCACCACAATTCCCAACCTCTTTCTGGCGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGTTTAGCAAGAGATACGACCATAGCTCAATTTGTGAAGCACTTTGGTAAATATGGTGAGATTACTGACTCTGTCATCATGAAGGACCGGAAAACTGGCCAGCCTCGTGGGTTCGGCTTTATAACTTATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACAATCATGTTATCAACGGCAAACAGGTTGAGATTAAGCGCACGATACCAAGGGGTGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGAGGGATTCCTTCAACTGTGACTGAAGATGAATTTAGAGACTTCTTTACTCGCTATGGAGAAGTCAAAGATCACCAAATAATGCGAGACCACTCCACCAATCGTTCTCGAGGCTTTGGGTTTATCACCTTCGACTCTGAGGACGCTGTTGATGATCTTTTAACAATGGGGAACAGGATTGAGTTTGCTGGTGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCGAACCCACCACCTACATCATCCAAGCGTTATAATGACTCAAGGTCTTCATATGGTAGTGGATATGGCGATTCATATGATGGATTTGGTGGCAGCTTTAGTGTAGGGGGTTATCGGTCAGGTGGTATGTATGGTGGTAGGAGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCAATGGGGCCCTATAGAGGAGATCCTTCCCTTGGATATGCTGGTCGTTATGGTGGTGGGGGCTTTGGTAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAAAGTTATGGGGCATACGGCGGTGGTGCTGGTGGTGGGGGTTCTTCTGGTGGCAGCGCTTATCAAAGTGGCTATGGTGCCAGCCTAAGTGGTGGGTATGGAGGGGCCAGTGGAGGCTCCTTTTATGGGAGTAGGGGAGGATATGGTGCCGGTCGATATCATCCTTATGGAAGATAG 1149 0.4735 MDSTGNDQFVGGGEPFSHREEHEEQPQQEDLEEEHEFQQHHHNSQPLSGDGASPGKIFIGGLARDTTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDNHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEDAVDDLLTMGNRIEFAGAQVEIKKAEPKKPNPPPTSSKRYNDSRSSYGSGYGDSYDGFGGSFSVGGYRSGGMYGGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGGFGRGYDLGGYGGASESYGAYGGGAGGGGSSGGSAYQSGYGASLSGGYGGASGGSFYGSRGGYGAGRYHPYGR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3363 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Dod02g3363 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 213 IPR000504 GO:0003723
Dod02g3363 382 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Dod02g3363 382 Gene3D - 15 139 IPR012677 -
Dod02g3363 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Dod02g3363 382 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 20 382 - -
Dod02g3363 382 MobiDBLite consensus disorder prediction 1 58 - -
Dod02g3363 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Dod02g3363 382 SMART rrm1_1 56 127 IPR000504 GO:0003723
Dod02g3363 382 SMART rrm1_1 144 217 IPR000504 GO:0003723
Dod02g3363 382 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 20 382 - -
Dod02g3363 382 Gene3D - 143 226 IPR012677 -
Dod02g3363 382 SUPERFAMILY RNA-binding domain, RBD 141 251 IPR035979 GO:0003676
Dod02g3363 382 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3363 Dod-Chr2 69676421 69679455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3363 48 203 Eukaryotic Initiation Factors Gene Family AT1G71770 24.713 7.94e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3363 K12741 - gmx:100793209 390.963