Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3345 ATGGTGAAACCATTCTCTCTAACCCACCACCTCTCCTCCCTCCTCCTCCTCTCGCGTTCCCTCCTCCTCCACCACCACCACCACCACCTCTTTCCCAAATCACCCTCCTCCCTCTCTCTCTCCCCGGTCCCCCGAACCTTCTCCACCAACCCCACCCCATACCCTCTCCAGTACGAACTAATCATCAACCACCCCGTCCAATCACACTCTCCACGTGCTCGACGAAATGCCCCCCTCCCCCAACCCCCCGAACCGGAAGAACCCAGCGAACCGGACGATGAACCAACCTCCGACCTCCGACTCGACAGCTGGGTCGACCGCAAGCTCGCCGAACCGGGTCAACCGGGTTCGGAACATCTCGACAAGGCGAAGAGGAAGTACTACAACAAGCGCATGAAGAGAATGTACGGGTCGGATTCCGAGGAAGAAGAGACCCGCCGAAGGTCCGAGGAGAATTTCGTTGAGCTCAAGCCAGAGGTTGTGGAGTTCCGTACACTTCACCGCAGGGAAGAAGAGTTGTACTTCTATGACGCGTTCTCGTACCCTTGGGAGAAGGACAAGCACTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTCCCTGAACACTGCCTCGACAAGGCTTTCCTCGAACCGGGTCAATCAAATTCAAATGAAAAAGAAAGTGTGAAGGGCAAGGAGGGGAAGGGAAGGAAGAGTGGTGTTATGAGGGGGAGGAAGGATGATAAGGGTGATAGCAAGTTGGTGTTTTTTGAGGAGAAAGGGATGGGTGGTGGTGGTGGTGGTGGTGGTGATGTTGGCGATTTGGTTAAGGATAAAAAAGATGTTGGGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGCTTGAAGAGAGTTGAGAAAAAGGATGGTGAAGTTGCTGGTGTTGCTGGAGAGCCTTATCTTTCGTCGAGAAGGACTGGCCTCCCACCGGTATGGGACGGTCCACATGGCACCGTCATTTTGATCAACAAACCCAAAGGTTGGACCTCATTCACAGTTTGTGGAAAGCTGCGTCGTCTAGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGATCCAATGGCTACTGGTTTGTTGATTGTTTGTGTTGGGAAAGCAACAAAACTGGTGGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTCTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAACACATCAAAGATGAGGACATAAAGAGAACTGCTGCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAGGATGTATGACAAGGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATATTACAGTTTGACATAGAGCGCAGCTTGGACGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATACATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGTTGCGCCCATTTAACGGCTCTACGAAGAGACTCAATTGGGCAATATTCAGCGGATGATGCATGGGACTTCCAAGAGCTGGAAGAAGCTATCCCCAAAAGTTATCTCTAA 1629 0.5021 MVKPFSLTHHLSSLLLLSRSLLLHHHHHHLFPKSPSSLSLSPVPRTFSTNPTPYPLQYELIINHPVQSHSPRARRNAPLPQPPEPEEPSEPDDEPTSDLRLDSWVDRKLAEPGQPGSEHLDKAKRKYYNKRMKRMYGSDSEEEETRRRSEENFVELKPEVVEFRTLHRREEELYFYDAFSYPWEKDKHYKMVYQLEKKYFPEHCLDKAFLEPGQSNSNEKESVKGKEGKGRKSGVMRGRKDDKGDSKLVFFEEKGMGGGGGGGGDVGDLVKDKKDVGEKKVEEFFKGLKRVEKKDGEVAGVAGEPYLSSRRTGLPPVWDGPHGTVILINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRTAASFCGEIWQVPPMFSAIKVGGERMYDKARRGESIELSPRRISILQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAIPKSYL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3345 542 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 301 539 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod02g3345 542 Hamap tRNA pseudouridine synthase B [truB]. 322 542 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod02g3345 542 SUPERFAMILY Pseudouridine synthase 324 536 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod02g3345 542 MobiDBLite consensus disorder prediction 252 271 - -
Dod02g3345 542 CDD PseudoU_synth_EcTruB 325 536 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dod02g3345 542 MobiDBLite consensus disorder prediction 67 99 - -
Dod02g3345 542 MobiDBLite consensus disorder prediction 210 242 - -
Dod02g3345 542 Pfam tRNA pseudouridylate synthase B C-terminal domain 495 537 IPR032819 -
Dod02g3345 542 Pfam TruB family pseudouridylate synthase (N terminal domain) 344 494 IPR002501 GO:0006396
Dod02g3345 542 MobiDBLite consensus disorder prediction 220 242 - -
Dod02g3345 542 Gene3D Pseudouridine synthase 320 541 - -
Dod02g3345 542 TIGRFAM TruB: tRNA pseudouridine(55) synthase 324 533 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3345 Dod-Chr2 69416790 69422006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3345 325 516 NAC Transcription Factor Family AT3G57150 34.896 3.51e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3345 K03177 - zju:107415230 658.677