Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3319 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACCGGAATGGTTAAGGCAGGGTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCTTATGTTGGTGATGAGGCACAGTCTAAGCGAGGTATTCTGACCCTCAAGTACCCCATTGAGCACGGTATTGTTAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTGGCCCCCGAAGAGCATCCGGTTCTCTTGACTGAGGCTCCCCTTAACCCCAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTTAACGCTCCAGCTATGTATGTTGCCATTCAGGCTGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGTTTCCTTCTCAACCAAGAGGTGCATCTCTATTGGTTCTCTTATTCATATATTAATTGTTTACATAAATAATGTATTGTCCTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCTATCTATGAGGGTTATGCCCTCCCACATGCCATTCCTTCGTCTCGATTTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAGATCCTGACTGAACGTGGGTATTCTTTCACCACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTGGCTTACATCGCCCTTGACTACGAGCAAGAGCTGGAGACAGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTCAGGTGTCCAGAGGTCTTGTTCCAACCATCCATGGTAGGAATGGAAGCAGCAGGCATTCATGAGACAACATACAATTCCATAATGAAGTGTGATGTTGACATCAGGAAGGACCTGTATGGTAACATTGTCCTCTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGGATGAGCAAAGAAATTTCCGCATTGGCCCCCAGCAGCATGAAGATCAAGGTGGTCGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGATGAGTCTGGACCATCAATTGTGCACAGAAAGTGCTTCTAA 1206 0.4768 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTVSFSTKRCISIGSLIHILIVYINNVLSWILVMVSATQFLSMRVMPSHMPFLRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3319 401 Pfam Actin 5 401 IPR004000 -
Dod02g3319 401 ProSitePatterns Actins signature 2. 382 390 IPR004001 -
Dod02g3319 401 PRINTS Actin signature 63 85 IPR004000 -
Dod02g3319 401 PRINTS Actin signature 117 130 IPR004000 -
Dod02g3319 401 PRINTS Actin signature 28 37 IPR004000 -
Dod02g3319 401 PRINTS Actin signature 51 62 IPR004000 -
Dod02g3319 401 PRINTS Actin signature 142 161 IPR004000 -
Dod02g3319 401 PANTHER - 201 400 - -
Dod02g3319 401 PANTHER - 1 152 - -
Dod02g3319 401 SMART actin_3 7 401 IPR004000 -
Dod02g3319 401 SUPERFAMILY Actin-like ATPase domain 202 401 IPR043129 -
Dod02g3319 401 CDD NBD_sugar-kinase_HSP70_actin 10 172 - -
Dod02g3319 401 Gene3D Actin; Chain A, domain 4 206 297 - -
Dod02g3319 401 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Dod02g3319 401 SUPERFAMILY Actin-like ATPase domain 5 148 IPR043129 -
Dod02g3319 401 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Dod02g3319 401 Gene3D - 10 395 - -
Dod02g3319 401 Gene3D - 140 364 - -
Dod02g3319 401 PANTHER ACTIN 201 400 IPR004000 -
Dod02g3319 401 PANTHER ACTIN 1 152 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3319 Dod-Chr2 68778040 68780266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3319 1 401 Cytoskeleton Gene Families AT3G12110 85.821 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3319 - K10355 sind:105159682 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3319 02 68778040 68780266 Dod01g0471 01 8486843 8488160 PCT