LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g3319	ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACCGGAATGGTTAAGGCAGGGTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCTTATGTTGGTGATGAGGCACAGTCTAAGCGAGGTATTCTGACCCTCAAGTACCCCATTGAGCACGGTATTGTTAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTGGCCCCCGAAGAGCATCCGGTTCTCTTGACTGAGGCTCCCCTTAACCCCAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTTAACGCTCCAGCTATGTATGTTGCCATTCAGGCTGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGTTTCCTTCTCAACCAAGAGGTGCATCTCTATTGGTTCTCTTATTCATATATTAATTGTTTACATAAATAATGTATTGTCCTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCTATCTATGAGGGTTATGCCCTCCCACATGCCATTCCTTCGTCTCGATTTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAGATCCTGACTGAACGTGGGTATTCTTTCACCACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTGGCTTACATCGCCCTTGACTACGAGCAAGAGCTGGAGACAGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTCAGGTGTCCAGAGGTCTTGTTCCAACCATCCATGGTAGGAATGGAAGCAGCAGGCATTCATGAGACAACATACAATTCCATAATGAAGTGTGATGTTGACATCAGGAAGGACCTGTATGGTAACATTGTCCTCTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGGATGAGCAAAGAAATTTCCGCATTGGCCCCCAGCAGCATGAAGATCAAGGTGGTCGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGATGAGTCTGGACCATCAATTGTGCACAGAAAGTGCTTCTAA	1206	0.4768	MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTVSFSTKRCISIGSLIHILIVYINNVLSWILVMVSATQFLSMRVMPSHMPFLRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*	402

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Dod02g3319	401	Pfam	Actin	5	401	IPR004000	-
Dod02g3319	401	ProSitePatterns	Actins signature 2.	382	390	IPR004001	-
Dod02g3319	401	PRINTS	Actin signature	63	85	IPR004000	-
Dod02g3319	401	PRINTS	Actin signature	117	130	IPR004000	-
Dod02g3319	401	PRINTS	Actin signature	28	37	IPR004000	-
Dod02g3319	401	PRINTS	Actin signature	51	62	IPR004000	-
Dod02g3319	401	PRINTS	Actin signature	142	161	IPR004000	-
Dod02g3319	401	PANTHER	-	201	400	-	-
Dod02g3319	401	PANTHER	-	1	152	-	-
Dod02g3319	401	SMART	actin_3	7	401	IPR004000	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g3319	Dod-Chr2	68778040	68780266	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g3319	1	401	Cytoskeleton Gene Families	AT3G12110	85.821	0.0	702

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g3319	-		K10355	sind:105159682	670.618

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g3319	02	68778040	68780266	Dod01g0471	01	8486843	8488160	PCT

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