Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3296 ATGTCTTCCTCCCGCGGCGGCGGAGTTACCTCCGGCAACCCCCAGCAATACTTCTGCCACCAGTGCGACCGCACCGTCTCCCTCGTCCCCCCCTCTTCCTCCGAGCTCCTCTGCCCTAATTGCAACGGCGGTTTCCTGGAAGAGCTCGAATCCCCATCCCCTAACCCTAACCCTATCCATCCTTTCTTCTCTTTCAACTCCGACCTTGCGGGGGGCGCCGGAGGAATTGGCGGCACCTTGCCCTTCCTATTCTCCGGTGGCGACGATCTATCCGCCCTGTTCGGCGGCGGCGCTCCCAACGCCCCCGCCGCCCCGGCCGACGCCTTCAATCCCTTCGTATTCCTCCAGAACTACATCCAAACCCTAAGAGCCGGCGGCGCCAACGTCCAGTTCGTGATCGAGAACTCCGGCGATCCGGCTGGAGGCGCGTTCCGGTTCCCCGGAAACCTAACCCACGGCGACTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCACCTCGCGGAGAACGATCCGAACCGCTACGGGACGCCTCCGGCGTCAAAGTCCGCCGTTGAGGGGCTGCCCGACGTGTCGGTGACGGAGGAGCTACTTGTATCGGATTCATCGCAGTGCGCGGTTTGCAAGGACACGTTCAAGCTCGGCGAATCGGCGAAGCAGATGCCGTGCAAGCACATATACCACTCCGATTGCATCTTGCCGTGGCTGGAACTGCACAATTCGTGCCCTGTTTGCCGTCACGAGCTGCCCACCGACGATCAGGATTACGAGCGGAGGGCACAGCGTGGCGGGGGTGCCCCGCCCCCTGCGCCGGTGAGCCGGGCCGCGGGGCCCGGTGGTTCGGCTGAATCTTCCGGTGGCGGCGGCGGCGGTGAGGATAACAATCGGCAAGCGGGGGAGAGGAGGGTGTTTAGGGTGTCTTTGCCGTGGCCGTTTCGGCAATTTGCTTCTTCTTCTGCGGAGACAAGCAATAACAATAATAATAACAACAGTAACAACAGTGGAAATAATAGTGGGCAATCGAATTCCGAAAGTAGAGGGAACCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTTGATTGA 1089 0.607 MSSSRGGGVTSGNPQQYFCHQCDRTVSLVPPSSSELLCPNCNGGFLEELESPSPNPNPIHPFFSFNSDLAGGAGGIGGTLPFLFSGGDDLSALFGGGAPNAPAAPADAFNPFVFLQNYIQTLRAGGANVQFVIENSGDPAGGAFRFPGNLTHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSAVEGLPDVSVTEELLVSDSSQCAVCKDTFKLGESAKQMPCKHIYHSDCILPWLELHNSCPVCRHELPTDDQDYERRAQRGGGAPPPAPVSRAAGPGGSAESSGGGGGGEDNNRQAGERRVFRVSLPWPFRQFASSSAETSNNNNNNNSNNSGNNSGQSNSESRGNQNFESETRQEDLD* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3296 362 MobiDBLite consensus disorder prediction 313 351 - -
Dod02g3296 362 MobiDBLite consensus disorder prediction 258 362 - -
Dod02g3296 362 CDD RING-H2_RNF126_like 205 247 - -
Dod02g3296 362 Pfam Ring finger domain 205 247 IPR001841 -
Dod02g3296 362 Pfam zinc-ribbon 15 49 IPR039525 GO:0061630
Dod02g3296 362 SUPERFAMILY RING/U-box 191 253 - -
Dod02g3296 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 253 IPR013083 -
Dod02g3296 362 SMART ring_2 206 246 IPR001841 -
Dod02g3296 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 9 324 - -
Dod02g3296 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 324 - -
Dod02g3296 362 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3296 Dod-Chr2 68295894 68301140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3296 164 260 C3H Transcription Factor Family AT5G15820 56.701 7.33e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3296 - K11982 gmx:100818686 414.075