Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3210 ATGGCTAAACTTGACACAGGACTCTTTGCACTCCTTGGAGCTGCTTCATTCCTTGGTGGCACTATGAGAATGACAGTGTCCATTTGTGTCATATTGCTTGAGCTCACAAATGATCTCTTGTTACTTCCCCTTGTGATGTTGGTCTTATTAGTCTCAAAAACTGTGGCTGACAGCTTCAATAAGGGTGTCTATGACCAAATACTGAAGATCAAGGGGCTTCCTTATTTGGAGGCTCATTCAGAACCTTACATGGGGAGTTTGGTTGCGCGTGATGTTGTCTCAGGTCCACTAGTCACCTTTTCTGGTATAGAAAAGGTGGGGAATATATTACATGCTTTGGAAACAACAGGGCACAATGGTTTTCCTGTCATTGATGAACCACCATTCTCAGATGCACCAGAGTTGTGTGGACTTGTGCTGAGGTCTCATTTGCTTGTGCTGCTCAAGGGGAAGAATTTTTCGAGGGATAGGGTGTTCGCTAGTGGCAGCATCTTCCAAAGAATTTCTGCATTGGATTTTGCTAAGGCAGGGTTAGGGAAGGGAGTCAAACTAGTGGATCTAGATATCTTGGAGGAAGAGAAGGATATGTATGTTGATCTCCATCCTATAACAAATGCATCACCATACACGGTTGTTGAGACCATGTCACTTGCCAAAGCTGCTATTCTTTTCCGGGAACGTGGACTAAGGCACTTGTGTGTTGTCCCTAAGAGCCAAGGGAGACCTCCGGTTGTTGGGATTCTAACACGCCACGATTTTATGCCGGAACATGTTTTGGGACTTTACCCTGACATCGAGCAGCCTCACAAAGGGGACTGA 819 0.4542 MAKLDTGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQILKIKGLPYLEAHSEPYMGSLVARDVVSGPLVTFSGIEKVGNILHALETTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSRDRVFASGSIFQRISALDFAKAGLGKGVKLVDLDILEEEKDMYVDLHPITNASPYTVVETMSLAKAAILFRERGLRHLCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPDIEQPHKGD* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3210 272 Gene3D Clc chloride channel 1 77 - -
Dod02g3210 272 PRINTS Chloride channel signature 63 77 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dod02g3210 272 PRINTS Chloride channel signature 7 23 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dod02g3210 272 PRINTS Chloride channel signature 25 44 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dod02g3210 272 Pfam CBS domain 207 253 IPR000644 -
Dod02g3210 272 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 1 267 - -
Dod02g3210 272 SMART cbs_1 96 149 IPR000644 -
Dod02g3210 272 SMART cbs_1 207 258 IPR000644 -
Dod02g3210 272 CDD CBS_pair_voltage-gated_CLC_euk_bac 89 256 - -
Dod02g3210 272 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 267 - -
Dod02g3210 272 SUPERFAMILY Clc chloride channel 4 79 IPR014743 -
Dod02g3210 272 Pfam Voltage gated chloride channel 4 57 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Dod02g3210 272 ProSiteProfiles CBS domain profile. 203 265 IPR000644 -
Dod02g3210 272 SUPERFAMILY CBS-domain pair 80 254 IPR046342 -
Dod02g3210 272 Gene3D - 78 259 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3210 Dod-Chr2 67081156 67082556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3210 1 266 Ion Channels AT5G49890 73.684 5.98e-131 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3210 K05016 - gmx:100809070 424.091