Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3194 ATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGACAACCACAGATGATGTTGAAGACTGGGTGTACCAACAATTAGAGAACACAACTCATCTTTTACATGGTGTAGTTCATGCCAATGGATATGGCCACCTTCTTCGTGTTAATGGCAAGGAAGGGGGCTCGAGATTTCTCTCTGGCTGCCATATCATGAACTTCTGGGATCGACTTTGCAAGACACTTGGAGTCAGAAAAGTTAGTGTCATGGATGTTTCAAAGAAATATGGGCTGGATTACCGCCTGCTCCATGCCATCATGAAGGGACATTCATGGTATGGTGAATGGGGTTATCAATTTGGCTCGTTTAGCTATGGGGTCACACAGGAAGCATATATATCTGCTGTTGAAAGCCTGTCCAATCTGCCCTTGTCCACCTTCCTCCCCCAGGCCCACAAACCCCCCTCTTGTGTGCAGGGCATGATCTCACATTACCTGTCTTTATCAGAGCATCAGCTTGTAAACATAAGAGACCTCTTTTGTTTCTTGATGGGTTTAATTCATGACACGCACAAGACTGCACCAAAAGTAGATGATGCCACCTCCAAGAAGCGCCGGTTTAATGCTACAGAGGTGTCATGTTCTTGGGAAAAGAGTGACGTGATCCGGGTAGAGGAAGCCATCCTCAGAGTGCTGCGTGCAGTGTCTGCGTCCAATTGGGTAAGCTGGCGTGCTCTTAGGGGTGCTGTCTACCGAGTGGCCTCTACAGAGCTGTTTGAATACTGCCTCACAGAACTGAGTGGAAAAGTTGTCTTTGGTGGAATGGTTGTTAATACCCGATGCAATCCTCAGACTGGAGCTTCTGAGTACAGACTTGAGGCTGCAAACGGTTCTACAGCAAACATGAATTCTTTAGGCTCAAGGTCAGAAGAGAACCTACTACATGACTTGCGATATTTATATGAGTCTTTGCTCCATCCTCATTTGATGCTAAACTCTGTCCCTGAGGATACACGGACTCTTGCGATGACCTCAGCTCAGAAACTTCTAGACTGCAAGCAGTTTGTAAAAGATTACAGGCCTGAGGTGTTGCCAATGGCAGATTTGTGTAGTATGCGCCTCTCATGTCAGGTGAAACTTCTGGATGAATCTGAAAATGACGTACCTGAAATCCCTGCAGAAGTGATTGTCCTACCCATAGATGCCACAGTGTCCAAACTTAAGATTGAAGTAGCAAATGCTTTTCAAGATGTATATCTCATGTTTAGAAGATTTGCAGTTGATGAGCTGGTTGGCTACAGCGGTGTAGATGATTCCACTCAGGTCAAGCTCTTGTTGGGATCGGCAGAATCGGTTCGTGTCCTAGGAAGATGCATTGGGAAGAATGTCTTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGACTGCAGCTGTGGGGCCAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATATCTGTGGAGTGTGGCAGCATACTAGGTGTTCTGACATTCGTGATATAGAACCTGTTCCTGCGCATTTTGTTTGCTCCAGATGCCAAAACTCTGACTTGAAACCTAAACCTAATAATGGTCACTGCAAATATCAGACTCGGACTAACATCAGTCGTAGTAGCAGTTGCTTCCGAAACGGCTTCCCAGTGCCTTCTGATGTTCACTAA 1695 0.4619 MCCGDILHLSESKCKSCNHVTTTDDVEDWVYQQLENTTHLLHGVVHANGYGHLLRVNGKEGGSRFLSGCHIMNFWDRLCKTLGVRKVSVMDVSKKYGLDYRLLHAIMKGHSWYGEWGYQFGSFSYGVTQEAYISAVESLSNLPLSTFLPQAHKPPSCVQGMISHYLSLSEHQLVNIRDLFCFLMGLIHDTHKTAPKVDDATSKKRRFNATEVSCSWEKSDVIRVEEAILRVLRAVSASNWVSWRALRGAVYRVASTELFEYCLTELSGKVVFGGMVVNTRCNPQTGASEYRLEAANGSTANMNSLGSRSEENLLHDLRYLYESLLHPHLMLNSVPEDTRTLAMTSAQKLLDCKQFVKDYRPEVLPMADLCSMRLSCQVKLLDESENDVPEIPAEVIVLPIDATVSKLKIEVANAFQDVYLMFRRFAVDELVGYSGVDDSTQVKLLLGSAESVRVLGRCIGKNVLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWQHTRCSDIRDIEPVPAHFVCSRCQNSDLKPKPNNGHCKYQTRTNISRSSSCFRNGFPVPSDVH* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3194 564 SUPERFAMILY FYVE/PHD zinc finger 466 528 IPR011011 -
Dod02g3194 564 SMART PHD_3 479 525 IPR001965 -
Dod02g3194 564 CDD PHD_MMD1_like 479 524 - -
Dod02g3194 564 ProSitePatterns Uncharacterized protein family UPF0054 signature. 42 52 IPR020549 -
Dod02g3194 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 530 IPR013083 -
Dod02g3194 564 Pfam PHD-finger 480 526 IPR019787 -
Dod02g3194 564 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 537 - -
Dod02g3194 564 PANTHER OS01G0877500 PROTEIN 1 537 - -
Dod02g3194 564 ProSitePatterns Zinc finger PHD-type signature. 480 524 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3194 Dod-Chr2 66943024 66947156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3194 34 524 PHD Transcription Factor Family AT5G22260 31.638 1.87e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod02g3194 PHD 3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3194 - - lja:Lj5g3v1222610.2 868.611