Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3170 ATGGAGGAAAATAAGATTTTTGGTTCTGTTCATGTGGTTAAGGGAGATGAGGCCCCAGATGGCTTCCACGTGGCACCAAGAACTGAAACTTTGCAGTTCTCCGGGCCCACGGTGGAGCCGCCGCCGCCGCCTCCTCCGTCTGTGGTGGCTCCGGCAACGGCGGCGGTGACGCTGGGAACGGATGGGAAGAAGAAGAGGGGCAGGCCTAGGAAGTATGGACCGGATGGCAGGGTGACGGCGGCAGCAGCAGCGGTGGCGCTGTCGCCGATGCCAATATCAGCGTCGATTCCGTTGACCGGAGAGTTCTCAGCTTGGAAAAGGGGCAGAGGGAGGCCTGTTGAATCAATCAAGAAGTCATATAAGTTTTATGATGTTGAAAGTGCTGCAGGACCAGGCAATGGAAGCACATACTCGTTTGGTGCTAATTTCACACCTCACATTCTTACAGTAAATGGTGGCGAGGATGTTACTATGAAGATTATGTCCTTCCAACAAGGATGCCGTGCTATATGCATTCTCTCTGCCAATGGCACAATATCAAATGTTACACTTCGTCAACCAACTTCTTCTGGCGGTACTTTAACATATGAGGGGCGGTTTGAGATTCTTTCCTTGTCTGGCTCGTATATGCCAACTGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGCATCGCATTGGCAGGTCCAGATGGTCGAGTAATGGGGGGTGGACTTGCTGGTTTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTTGTTGGTAGTTTTCTTCCAGGTCATCACCTGGAGCAGAAACAGAAGAAGCAAAGGGTATCAGCTGTTGGCCCTCCTCCACTTGTTAACACTATTTCTGCTGAAGAAATAAAAATCAGTCTTGGTGGAGTAGAGCCTATTATGATGACACCTGCCACTTTTCAAGTGGACAACATTCCTTCTTTTGTCAATGTTCAACGCTCTAGGAACTCATCTGATGATGACGATGAAGCTTCTTTGCATGAGAAAGAGTCTAACCCCAGCCAATCAGATGCTGGAGTTGCATGCTAA 1047 0.4986 MEENKIFGSVHVVKGDEAPDGFHVAPRTETLQFSGPTVEPPPPPPPSVVAPATAAVTLGTDGKKKRGRPRKYGPDGRVTAAAAAVALSPMPISASIPLTGEFSAWKRGRGRPVESIKKSYKFYDVESAAGPGNGSTYSFGANFTPHILTVNGGEDVTMKIMSFQQGCRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSIALAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHHLEQKQKKQRVSAVGPPPLVNTISAEEIKISLGGVEPIMMTPATFQVDNIPSFVNVQRSRNSSDDDDEASLHEKESNPSQSDAGVAC* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3170 348 MobiDBLite consensus disorder prediction 318 348 - -
Dod02g3170 348 Gene3D - 145 274 - -
Dod02g3170 348 ProSiteProfiles PPC domain profile profile. 139 279 IPR005175 -
Dod02g3170 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 334 IPR039605 GO:0003680
Dod02g3170 348 SMART AT_hook_2 63 75 IPR017956 GO:0003677
Dod02g3170 348 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Dod02g3170 348 MobiDBLite consensus disorder prediction 321 336 - -
Dod02g3170 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 334 - -
Dod02g3170 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 260 - -
Dod02g3170 348 CDD DUF296 144 257 IPR005175 -
Dod02g3170 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 257 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3170 Dod-Chr2 66668396 66673190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3170 47 310 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 52.508 1.28e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3170 - - adu:107489679 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3170 02 66668396 66673190 Dod02g1020 02 12840602 12847121 ECH
Dod02g3170 02 66668396 66673190 Dod02g3170 02 66668396 66673190 ECH
Dod02g3170 02 66668396 66673190 Dod06g1482 06 19853322 19858721 PCT