Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3151 ATGCCTTCCATTCTCCTCTCAAACGACGCCGTTGCCGCCAGCGAAACCCCCAAAGACAAGAAGCAAAAGAAGAACAGAGACAAGAAAAACAACAAAAACGACGACAGCAACACACAGGCTCTGCTAAACGACGCCGTTTCGGAGCCCGAGAGCAAGAAGAAGGGCTCGAAGAAGCGTAAGAAGGTTTCATCTTCTTCTGATGAGGAGAACGAGGATGAGAAGAGTGAGACTAGCTCCGAGCTCGTTGAGCCTAGCGATGAGGGTTTGAAGTCGAAGGAGAAGAAGAAGAACAACAAGAAGAACAAGAAGGCGAAGGTGGAGATGGAAGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGAATCCGAACGCGATTACGAAGTTCAGGATATCGGAGCCTCTGAGGTTGAAGCTGAAGGAGAAAGGGATCGAAGCGCTGTTTCCGATTCAGGCCATGACCTTCGATATCGTCCTCGATGGCTCCGATTTGGTTGGTCGTGCTCGCACCGGTCAGGGCAAAACACTGGCGTTTGTGTTGCCCATATTGGAGTCTCTGACAAATGGTCCAGCGAAAGCCTCCCGAAAGACTGGCTACGGGAGGTCCCCGAGTGTCCTTGTGCTTTTACCCACTAGGGAATTGGCCAGTCAGGTGTATGCTGATTTTGAAGTTTATGGCGGGGCAATGGGATTGAGTTCTTGCTGTTTATATGGTGGGGCTCCGTATCATACTCAAGAGATTAAACTCAAGAGAGGTGTTGATATCGTTGTCGGCACCCCAGGTCGCATAAAGGATCATATTGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTGGAACTAATTCTAGGTAAGGTAGAAGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACATTGCCAGACTGGGTCAAGCATATTTCTACAAGATTTCTGAAACCAAATAAGAAAACTACTGATCTGGTTGGAAATGAGAAAATGAAGGCTAGCACTAATGTTAGGCATATTGTTCTTCCATGTAATAGTTCTGCCAGGTCCCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGTCGGACTATTATATTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCAGGGTTGTTGCCTGGAGCAAGAGCACTCCATGGTGACATACAGCAGTCACAACGTGAGGTTACATTGTCGGGTTTTAGGTCTGGGAAATTCTTGACATTGGTGGCCACAAATGTTGCAGCTAGGGGATTAGATATAAATGATGTTCAGCTAATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCCTATATTCATCGATCTGGGCGCACAGGAAGAGCAGGGAATACTGGAGTTGCTGTAATGCTTTACGATCCCAGAAGGTCAAATGTATCTAAAATAGAAAGAGAGTCGGGTGTGAAATTTGAACACATATCTGCCCCCCAGCCAGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACTCAAGTGTCTGATAGTGTGATTCCTGCTTTCAAGTCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTATCCGCTGTTGATTTACTTGCAAAAGCTCTTGCCAAGGCTGTGGGTTTTACGGAGATAAAGAAAAGATCACTTTTGACTTCCATGGAGAATTATGTTACATTGCTCCTAGAGATTGGAAGACCTATCTACACTCCGTCCTTTGCATTTGGTGTCCTGAGGAGATTCATGCCTGAGGAGAAGGTTGATGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCCAAAGATTTAGATACATATCTTACAGGTCAGCAAAATGCTGCTAATGTATGCCTAGAGGTGTTAAAGGCATTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGCAGATTTGGTGGTGGTCGTGGGTTTAATGATAGAAATGGTGGGAACAGGTTTTCAGGAGGAAGAGGTGGCACCAGGAATGGTAGATTCTCGAATGGGAGAGGAGGTAATGGGAACAGAGGTGGAAGGAGATGGTAA 2112 0.4626 MPSILLSNDAVAASETPKDKKQKKNRDKKNNKNDDSNTQALLNDAVSEPESKKKGSKKRKKVSSSSDEENEDEKSETSSELVEPSDEGLKSKEKKKNNKKNKKAKVEMEEEEEEEEEEENPNAITKFRISEPLRLKLKEKGIEALFPIQAMTFDIVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRSPSVLVLLPTRELASQVYADFEVYGGAMGLSSCCLYGGAPYHTQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPDWVKHISTRFLKPNKKTTDLVGNEKMKASTNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAVDLLAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGRPIYTPSFAFGVLRRFMPEEKVDAVQGLTLTADGNGAVFDVPAKDLDTYLTGQQNAANVCLEVLKALPRLQERDQSRGGRFGGGRGFNDRNGGNRFSGGRGGTRNGRFSNGRGGNGNRGGRRW* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3151 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 335 IPR014001 -
Dod02g3151 703 Gene3D - 346 572 IPR027417 -
Dod02g3151 703 SUPERFAMILY RNA-binding domain, RBD 560 643 IPR035979 GO:0003676
Dod02g3151 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 506 IPR001650 -
Dod02g3151 703 Pfam DEAD/DEAH box helicase 146 323 IPR011545 GO:0003676|GO:0005524
Dod02g3151 703 Gene3D - 573 645 - -
Dod02g3151 703 MobiDBLite consensus disorder prediction 654 703 - -
Dod02g3151 703 CDD GUCT_RH7_like 563 648 - -
Dod02g3151 703 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Dod02g3151 703 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 34 684 - -
Dod02g3151 703 MobiDBLite consensus disorder prediction 77 94 - -
Dod02g3151 703 CDD DEADc 137 330 - -
Dod02g3151 703 MobiDBLite consensus disorder prediction 14 34 - -
Dod02g3151 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 479 IPR027417 -
Dod02g3151 703 MobiDBLite consensus disorder prediction 1 122 - -
Dod02g3151 703 SMART ultradead3 141 353 IPR014001 -
Dod02g3151 703 CDD SF2_C_DEAD 350 476 - -
Dod02g3151 703 Pfam GUCT (NUC152) domain 556 651 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dod02g3151 703 Pfam Helicase conserved C-terminal domain 369 467 IPR001650 -
Dod02g3151 703 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 684 - -
Dod02g3151 703 SMART helicmild6 390 467 IPR001650 -
Dod02g3151 703 Coils Coil 89 126 - -
Dod02g3151 703 Gene3D - 67 335 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3151 Dod-Chr2 66495431 66500385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3151 159 473 Eukaryotic Initiation Factors Gene Family AT1G72730 31.661 3.43e-40 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3151 02 66495431 66500385 Dod02g3151 02 66495431 66500385 ECH