LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g3124	ATGGGAAGAGGGAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGCCAAGTGACCTTCTCAAAGCGGAGGAGTGGTTTGCTGAAGAAAGCCTTCGAGCTTTCTGTGCTGTGTGATGCTGAAGTAGCACTTATCATCTTCTCTAGCCGTGGAAAGCTTTTCCAGTACAGCAGCTCCGACATTAATAGAATTATTGAGAGGTATCGCCAATGCCGTTACAACAAGCTGTCACAGGCTAACGGTTTGCTTGAATATGAATCACAGAACTTATACCAGGATTTCTTGAAATTAAGAGTCCAATATGAATCTCTTGAGCGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCCCTTAGCATGAAGGACTTGGTGAACCTTGAGAAACAACTAGAAAGAACAATGGCACTAGCTCGACAGCAGCATACAAAGAAGCTCATGGCCCGACAAGCAGAATTAAAAGATAAGGTGCTAGAGGAGGAGGAGCTTAACAAACAATTGAAATCCAAGTTAAAAGATGAATTCTCGATCCTTGCCCCTGACAGTAACAACCCTATTCAGTTGCATGCTGCGCAAGCCAATCAGTTCGATTCTGAGACAGCCTTAAACACTTGGTTTAGGCACCAGGAAGCAACTTCAAAAGGAACAGGGAATGGGACAAGGGCACAGGCTGGTCAGAGCAGTCACGACAAAAGCAATGGATGGCTGCTGTGA	717	0.4505	MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSSDINRIIERYRQCRYNKLSQANGLLEYESQNLYQDFLKLRVQYESLERTQRHFQGEELEPLSMKDLVNLEKQLERTMALARQQHTKKLMARQAELKDKVLEEEELNKQLKSKLKDEFSILAPDSNNPIQLHAAQANQFDSETALNTWFRHQEATSKGTGNGTRAQAGQSSHDKSNGWLL*	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g3124	238	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	PANTHER	MADS BOX PROTEIN	1	237	-	-
	Dod02g3124	238	Coils	Coil	122	142	-	-
	Dod02g3124	238	Gene3D	-	13	91	IPR036879	GO:0003677\|GO:0046983
	Dod02g3124	238	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Dod02g3124	238	Coils	Coil	151	171	-	-
	Dod02g3124	238	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod02g3124	238	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Dod02g3124	238	MobiDBLite	consensus disorder prediction	212	238	-	-
	Dod02g3124	238	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	PANTHER	MADS-BOX TRANSCRIPTION FACTOR	1	237	-	-
	Dod02g3124	238	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Dod02g3124	238	Pfam	K-box region	87	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g3124	Dod-Chr2	66039433	66046871	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g3124	1	238	MADS-box Gene Family	AT2G45650	42.969	5.24e-55	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Dod02g3124		K-box	1.2e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g3124	K09264		-	gmx:100793681	323.939

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g3124	02	66039433	66046871	Dod02g3124	02	66039433	66046871	ECH
	Dod06g0718	06	8691009	8700632	Dod02g3124	02	66039433	66046871	PCT