Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3121 ATGATGGTAAGGAGGGGAAAGGTTCAGATGAAAAGAATTGAGAATGAAATGAGTCGTCAGGTGACCTTTTCAAAGCGTAGAAATGGGCTTGTGAAGAAAGCAAAGGAGTTATCAATTCTTTGTGACGCACAAGTTGCAGTGATAATCTTCTCACAGAAGGGCAGGCTCTATGAGTATTCAAGTTCAGACATCAAGAAGATTTTGGAACGCCACCATCAATATGTCCTCAAAGATGATCCCACCAATAAGGTTAGAGTTGGCTCTATCCAGCAACTTGAATCAGACGCCTCAATAAGCATGGCAAAGAAGATTGAGCTTCTTGAGCTTTCTCAAAGGAAGCTATTGGGACATGGCTTAAGTTCTTGTTCATATGATGAACTCCAAGGAATTGAGAACCAGCTTGTGACAAGTTTGCAAAACATCAGGCTGAGAAAGGCTCAGCTTTATAGGGAGAATATTGAACAGCTGCAAGACAAGGTAGCCTTGGCTCAGGAAAGGAACTTGCTCATAGAGAATGCCAAATTAAGTGAAATGTGTGGCCAAAAACCAAAACACAGAGAAGATGTAGCAGAAGCACCATCGCGTAGTCCAAGTACCCAAAGTTCACATGCGGTGGATACTGAATTGTTTATTGGGCTTCCACAATGGCGCTGA 654 0.4251 MMVRRGKVQMKRIENEMSRQVTFSKRRNGLVKKAKELSILCDAQVAVIIFSQKGRLYEYSSSDIKKILERHHQYVLKDDPTNKVRVGSIQQLESDASISMAKKIELLELSQRKLLGHGLSSCSYDELQGIENQLVTSLQNIRLRKAQLYRENIEQLQDKVALAQERNLLIENAKLSEMCGQKPKHREDVAEAPSRSPSTQSSHAVDTELFIGLPQWR* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3121 217 MobiDBLite consensus disorder prediction 179 204 - -
Dod02g3121 217 SUPERFAMILY SRF-like 5 82 IPR036879 GO:0003677|GO:0046983
Dod02g3121 217 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Dod02g3121 217 CDD MADS_MEF2_like 4 74 IPR033896 GO:0000977|GO:0045944
Dod02g3121 217 ProSiteProfiles K-box domain profile. 90 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g3121 217 Coils Coil 146 173 - -
Dod02g3121 217 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 Pfam K-box region 97 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g3121 217 PANTHER MADS BOX PROTEIN 4 214 - -
Dod02g3121 217 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Dod02g3121 217 PANTHER MADS-BOX PROTEIN SOC1 4 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3121 Dod-Chr2 65997629 66004434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3121 5 217 MADS-box Gene Family AT4G22950 48.372 6.85e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod02g3121 K-box 5.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3121 - - adu:107467111 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3121 02 65997629 66004434 Dod02g3121 02 65997629 66004434 ECH