Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3113 ATGGACCTTGATGGTGGTAACAAGCGAGTGTTCCACCGATTAGGTGGACCCGCAGGGGATGCGAAGCACCAGAAAGTGTGCTATCACTGGCAAGCTGGCAAGTGCAATCGTCATCCATGCCCTTTTCTACATAGCGAATTGCCACCTCCCAATGTTAATGGCACTTCTTCGAAGAGGCCTTATGGTTCTGCTGATAATTCCGGGTTTTCGGGTCATCGCCGGAACCCTAATTTCAACAACACGTGGGGGCGTGGCGGCGGCGGTGGTGGAGGAGGTGGAGGAGGAGTGGGTGGTGGTAATAGGAGTTTAGTTAGGAAGGCTGATAAAGTTTGTAATTATTGGGTTCAAGGGAATTGTAGTTTTGGTGAGAGGTGTAAGTTTCTTCACTCTTGGAGTTCAGGAGATGGGTTTTCTATGTTGACTCAGCTTGAAGGGCATCAAAAGGTTGTGAGTGGAATTGCCTTTCCCTCTGGTTCAGATAAGCTTTATACTGGAGGTACTGATGAGACAGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTATAGGTATGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCTAATTTTGTTAAGGTATGGAACACACAAAATTCAATGGAATTAAGTCTAACTGGCCCTGTTGGACAAGTTTATGCACTTGTTGTGAATACCGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGCTTGGAAGTTCAATGTAGCTGCTAACTGCTTTCAGCCAGTTGCATCATTGAAAGGTCATACCCGTGGGGTTGTTTCATTAGTTGTTGGAGCTAATAGACTCTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAACCTTGAAACTTTGCAGTGTTTACAGACATTAACAGAGCACACATCTGTTGTGATGTCTGTTCTATGCTGGGATCAGTTCCTTCTATCGTGTTCATTGGACAAAACAGTGAAGGTGTGGTTTGCTACAGAAAGTGGGAACTTGGAAGTGACATATACTCACAATGAAGAACATGGAATACTTACACTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGTTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCGTCATTTGCAGAGAGAGGCAAGATATTCACGACGCAAGAGGTACGGGCAATTCAGGCAGGGCCTAATGGCATATTCTTCACCGGCGATGGAACTGGTCAAGTGAGAGTGTGGAATTGGTCGGCGGAGCCAGCCACTTCCATCCAATATAACGGCACTTAA 1314 0.4566 MDLDGGNKRVFHRLGGPAGDAKHQKVCYHWQAGKCNRHPCPFLHSELPPPNVNGTSSKRPYGSADNSGFSGHRRNPNFNNTWGRGGGGGGGGGGGVGGGNRSLVRKADKVCNYWVQGNCSFGERCKFLHSWSSGDGFSMLTQLEGHQKVVSGIAFPSGSDKLYTGGTDETVRVWDCQSGKCIGMINLGGEVGCMISEGPWVFVGIPNFVKVWNTQNSMELSLTGPVGQVYALVVNTDMLFAGTQDGSILAWKFNVAANCFQPVASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWFATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFTTQEVRAIQAGPNGIFFTGDGTGQVRVWNWSAEPATSIQYNGT* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3113 437 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 430 - -
Dod02g3113 437 SUPERFAMILY WD40 repeat-like 137 425 IPR036322 GO:0005515
Dod02g3113 437 SMART c3hfinal6 107 131 IPR000571 GO:0046872
Dod02g3113 437 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Dod02g3113 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Dod02g3113 437 SUPERFAMILY CCCH zinc finger 106 130 IPR036855 GO:0046872
Dod02g3113 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 305 IPR001680 GO:0005515
Dod02g3113 437 ProSiteProfiles Zinc finger C3H1-type profile. 105 132 IPR000571 GO:0046872
Dod02g3113 437 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Dod02g3113 437 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Dod02g3113 437 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Dod02g3113 437 Gene3D - 101 130 - -
Dod02g3113 437 SMART WD40_4 299 336 IPR001680 GO:0005515
Dod02g3113 437 SMART WD40_4 259 296 IPR001680 GO:0005515
Dod02g3113 437 SMART WD40_4 340 383 IPR001680 GO:0005515
Dod02g3113 437 SMART WD40_4 136 175 IPR001680 GO:0005515
Dod02g3113 437 SMART WD40_4 215 252 IPR001680 GO:0005515
Dod02g3113 437 SMART WD40_4 386 423 IPR001680 GO:0005515
Dod02g3113 437 Gene3D - 282 436 IPR015943 GO:0005515
Dod02g3113 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 299 - -
Dod02g3113 437 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Dod02g3113 437 Gene3D - 131 281 IPR015943 GO:0005515
Dod02g3113 437 Pfam WD domain, G-beta repeat 261 296 IPR001680 GO:0005515
Dod02g3113 437 Pfam WD domain, G-beta repeat 140 175 IPR001680 GO:0005515
Dod02g3113 437 Pfam WD domain, G-beta repeat 301 335 IPR001680 GO:0005515
Dod02g3113 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 175 - -
Dod02g3113 437 Pfam Zinc finger domain 111 129 - -
Dod02g3113 437 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Dod02g3113 437 MobiDBLite consensus disorder prediction 51 73 - -
Dod02g3113 437 PANTHER - 1 430 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3113 Dod-Chr2 65925155 65929567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3113 238 423 Miscellaneous Gene Families AT5G08390 26.020 2.31e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod02g3113 WD40 0.00026 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3113 - - gmx:100792089 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3113 02 65925155 65929567 Dod02g3113 02 65925155 65929567 ECH